View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13129_low_8 (Length: 443)
Name: NF13129_low_8
Description: NF13129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13129_low_8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 10 - 443
Target Start/End: Complemental strand, 46273903 - 46273474
Alignment:
| Q |
10 |
aacaatatataatccatacatatgtggttgggagtgtagttggctatgctagtggattttagtcattgagtattctctaataagtaaatcatcaagttag |
109 |
Q |
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| T |
46273903 |
aacaatatatactccatacatacgtggttgggagtgtagttggctatgctagtggattttagtcattgagtattctctaataagtaaatcattaagttag |
46273804 |
T |
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| Q |
110 |
tctctgacttttgtcnnnnnnnnnngttagtctcagactttgtaagacactctcagataagtctttgagattatgaatgtttcaaaaagatcatcaactc |
209 |
Q |
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| T |
46273803 |
tctctgacttttgtccaaaaaaaaagttagtctcaaactttgtaagacactctcagataagtctttgagattatgaatgtttcaaaaagatcatcaactc |
46273704 |
T |
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| Q |
210 |
tattgaaatatcaattacatccttatactttgatcatttactatcaatatcatctctaaatttaacttactatcatatatggtccgagactcgaatgatg |
309 |
Q |
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| T |
46273703 |
tattgaaatatcaattacatccttatactttgatcatttactatcaatatcatctctaaatttaacttactatcatatatggtccgagactcgaatgatg |
46273604 |
T |
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| Q |
310 |
tgtgtaaaatctggattaatttctacaagtacactccaaaggcagagataaaaatattattttttatatctccctttggagtgtacttgtaggaattaat |
409 |
Q |
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| T |
46273603 |
tgtgtaaaatctgaattaattcctacaagtacactctaaaaggagagataaaaata----tttgtatctctccctttggagtgcacttgtaggaattaat |
46273508 |
T |
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| Q |
410 |
ctagattttcatcctcaccaattttatcttagga |
443 |
Q |
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| T |
46273507 |
ctaaattttcatcatcgccaattttatcttagga |
46273474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 418
Target Start/End: Original strand, 46273507 - 46273598
Alignment:
| Q |
323 |
gattaatttctacaagtacactccaaaggcagagataaaaatattattttttatatctccctttggagtgtacttgtaggaattaatctagatttt |
418 |
Q |
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| T |
46273507 |
gattaattcctacaagtgcactccaaagggagagatacaaata----tttttatctctccttttagagtgtacttgtaggaattaattcagatttt |
46273598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 34942560 - 34942613
Alignment:
| Q |
145 |
gactttgtaagacactctcagataagtctttgagattatgaatgtttcaaaaag |
198 |
Q |
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| T |
34942560 |
gactttgtaagaaactcttaaataagtctttgagattatgaatatttcaaaaag |
34942613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 34942825 - 34942767
Alignment:
| Q |
145 |
gactttgtaagacactctcagataagtctttgagattatgaatgtttcaaaaagatcat |
203 |
Q |
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| T |
34942825 |
gactttgtaagacactttcaattagatccttgagattatgaatatttcaaaaagatcat |
34942767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 34295937 - 34295987
Alignment:
| Q |
136 |
ttagtctcagactttgtaagacactctcagataagtctttgagattatgaa |
186 |
Q |
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| T |
34295937 |
ttagtctccgactttgtatgacactctcaaataggtttttgagattatgaa |
34295987 |
T |
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