View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13129_low_9 (Length: 411)
Name: NF13129_low_9
Description: NF13129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13129_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 32895875 - 32896263
Alignment:
| Q |
1 |
gtttttgtcacaatgtttaaccctcttagtaccatatttgtgacaattctagcgtacttcgtccttggtgaaaaactttatctgggcaggtaaacttgtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32895875 |
gtttttgtcacaatgtttaaccctcttagtaccatatttgtgacaattctagcttacttcgtccttggtgaaaaactttatctgggcaggtaaacttgtt |
32895974 |
T |
|
| Q |
101 |
tacaccgacaatgtatcaatgttaagctcttctaaaaattacaactatgaatatgtagttagtggtcacgtttttcttcgaaaagtaacttgcttctcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32895975 |
tacaccgacaatgtatcaatgttaagctcttctaaaaattacaactatgaatacgtagttagtggtcacgtttttcttcgaaaagtaacttgcttctcat |
32896074 |
T |
|
| Q |
201 |
caaatcttcagcatcataggtggttttattgtcatcatgggtctatatttgttactgtggggtaaagaaggtgacaaagaggttgatatcaagaccaaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32896075 |
caaatcttcagcatcataggtggttttattgtcatcatgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatatcaagaccaaag |
32896174 |
T |
|
| Q |
301 |
ttaaaaggcagtacaatagcggagacggagacgtagaagaatgcagaatatagcaagtatctttagctggtaaggtagcagagatgtac |
389 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
32896175 |
ttaaaaggcagtacaatagtggagacggagacgtagaagaatgcagaatatagcaagcatccttagctggtaaggtagcagagatgtac |
32896263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 32919275 - 32919463
Alignment:
| Q |
1 |
gtttttgtcacaatgtttaaccctcttagtaccatatttgtgacaattctagcgtacttcgtccttggtgaaaaactttatctgggcaggtaaacttgtt |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| ||||| |
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| T |
32919275 |
gtttttgtcacaatgtttaaccctctttgtaccatatttgtgacaattctagcatacttcgtctttggtgaaaaactttatttgggcaggtaaatttgtt |
32919374 |
T |
|
| Q |
101 |
tacaccgacaatgtatcaatgttaagctcttctaaaaattacaactatgaatatgtagttagtggtcacgtttttcttcgaaaagtaac |
189 |
Q |
| |
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|||| |||||||||||||| ||||| |||||||||| ||||||||||||||| ||||| ||| | |||||||||||| ||||| |||| |
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| T |
32919375 |
tacatcgacaatgtatcaaagttaaactcttctaaatgttacaactatgaatacgtagtcagtagacacgtttttcttagaaaaataac |
32919463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 32952913 - 32953049
Alignment:
| Q |
1 |
gtttttgtcacaatgtttaaccctcttagtaccatatttgtgacaattctagcgtacttcgtccttggtgaaaaactttatctgggcaggtaaacttgtt |
100 |
Q |
| |
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|||||||||||| |||||||||||||| |||| ||||||||| |||||||||| ||||||||| ||||||||||||||||| |||||||||||| ||||| |
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| T |
32952913 |
gtttttgtcacagtgtttaaccctctttgtactatatttgtggcaattctagcatacttcgtctttggtgaaaaactttatttgggcaggtaaatttgtt |
32953012 |
T |
|
| Q |
101 |
tacaccgacaatgtatcaatgttaagctcttctaaaa |
137 |
Q |
| |
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|| || ||||||||||||| ||||| ||||||||||| |
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| T |
32953013 |
tagactgacaatgtatcaaagttaaactcttctaaaa |
32953049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 32885172 - 32885309
Alignment:
| Q |
1 |
gtttttgtcacaatgtttaaccctcttagtaccatatttgtgacaattctagcgtacttcgtccttggtgaaaaactttatctgggcaggtaaacttgtt |
100 |
Q |
| |
|
||||||||||| | |||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | || |
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| T |
32885172 |
gtttttgtcactgtatttaaccctctttgtaccatatttgtggcaattctagcatacttcgtccttggtgaaaaactttatctgggcaggtaaaactttt |
32885271 |
T |
|
| Q |
101 |
tacaccgacaatgtatcaatgttaagctcttctaaaaa |
138 |
Q |
| |
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|||| ||||||||| || ||||| |||||||||||| |
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| T |
32885272 |
tacagtaacaatgtattaaagttaaactcttctaaaaa |
32885309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 197 - 298
Target Start/End: Original strand, 32919503 - 32919604
Alignment:
| Q |
197 |
tcatcaaatcttcagcatcataggtggttttattgtcatcatgggtctatatttgttactgtggggtaaagaaggtgacaaagaggttgatatcaagacc |
296 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||| |
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| T |
32919503 |
tcattaaattttcagcatcataggtggttttattgtcatcgtgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatttcaagacc |
32919602 |
T |
|
| Q |
297 |
aa |
298 |
Q |
| |
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|| |
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|
| T |
32919603 |
aa |
32919604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 205 - 355
Target Start/End: Original strand, 32885359 - 32885509
Alignment:
| Q |
205 |
tcttcagcatcataggtggttttattgtcatcatgggtctatatttgttactgtggggtaaagaaggtgacaaagaggttgatatcaagaccaaagttaa |
304 |
Q |
| |
|
|||| ||||||||||||| |||||||| ||||||||| | ||| |||| |||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
32885359 |
tctttagcatcataggtgcatttattgtgatcatgggtttgtatctgttgctgtgggggaaagaaggtgacaaagaggttgatttcaagaccaaagttaa |
32885458 |
T |
|
| Q |
305 |
aaggcagtacaatagcggagacggagacgtagaagaatgcagaatatagca |
355 |
Q |
| |
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| ||||||||| | ||||| |||| | |||||||||| |||||||||| |
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| T |
32885459 |
attgcagtacaaaaatggagaaggaggcttagaagaatgttgaatatagca |
32885509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 19503846 - 19503754
Alignment:
| Q |
1 |
gtttttgtcacaatgtttaaccctcttagtaccatatttgtgacaattctagcgtacttcgtccttggtgaaaaactttatctgggcaggtaa |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| || || | ||||||||||||||||||||| ||||||||||| |
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| T |
19503846 |
gtttttgtcacaatgtttaaccctcttagtaccatatttgtggcaattctggcatattctgtccttggtgaaaaactttatttgggcaggtaa |
19503754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 197 - 305
Target Start/End: Complemental strand, 19503637 - 19503529
Alignment:
| Q |
197 |
tcatcaaatcttcagcatcataggtggttttattgtcatcatgggtctatatttgttactgtggggtaaagaaggtgacaaagaggttgatatcaagacc |
296 |
Q |
| |
|
|||| |||| |||||||| || |||| |||||||||||||||| ||||| |||||||||||||| ||||||||||||| |||||||||| |||||||| |
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|
| T |
19503637 |
tcataaaattttcagcatgatcggtgcacttattgtcatcatgggactatacttgttactgtgggggaaagaaggtgacagagaggttgatttcaagacc |
19503538 |
T |
|
| Q |
297 |
aaagttaaa |
305 |
Q |
| |
|
|||| |||| |
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|
| T |
19503537 |
aaaggtaaa |
19503529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 32935747 - 32935838
Alignment:
| Q |
207 |
ttcagcatcataggtggttttattgtcatcatgggtctatatttgttactgtggggtaaagaaggtgacaaagaggttgatatcaagaccaa |
298 |
Q |
| |
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|||||| ||||||||| |||||||||||||||||| | |||||||| |||||||| |||||||||||||||||| ||||| | |||||||| |
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| T |
32935747 |
ttcagcctcataggtgcatttattgtcatcatgggtttgtatttgttgctgtgggggaaagaaggtgacaaagagattgatttgaagaccaa |
32935838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 32953136 - 32953234
Alignment:
| Q |
202 |
aaatcttcagcatcataggtggttttattgtcatcatgggtctatatttgttactgtggggtaaagaaggtgacaaagaggttgatatcaagaccaaag |
300 |
Q |
| |
|
|||| |||||||| ||||||| ||||| |||||||||||| | |||||||| |||||||| |||||||||||||||| ||| ||| |||||||||||| |
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| T |
32953136 |
aaattttcagcattataggtgcatttatcgtcatcatgggtttgtatttgttgctgtgggggaaagaaggtgacaaagtggtcgatttcaagaccaaag |
32953234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 32935531 - 32935624
Alignment:
| Q |
1 |
gtttttgtcacaatgtttaaccctcttagtaccatatttgtgacaattctagcgtacttcgtccttggtgaaaaactttatctgggcaggtaaa |
94 |
Q |
| |
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|||||||| ||| | |||||||||||| ||||||||||||| |||||||||| ||||| |||||||||||||| ||||| |||||||||||| |
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| T |
32935531 |
gtttttgttacagtctttaaccctctttctaccatatttgtggcaattctagcatactttgtccttggtgaaaatttttatttgggcaggtaaa |
32935624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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