View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1313-Insertion-1 (Length: 603)
Name: NF1313-Insertion-1
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1313-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 8 - 599
Target Start/End: Complemental strand, 18533820 - 18533229
Alignment:
| Q |
8 |
ataagggtataccaacatggtatattttttattccactaacaaaattaaattatgtctcttgattagtcatatacatgtatatcaacaatcaaattttgt |
107 |
Q |
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| T |
18533820 |
ataagggtataccaacatggtatattttttattccactaacaaaattaaattatgtctcttgattagtcatatacatgtatatcaacaatcaaattttgt |
18533721 |
T |
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| Q |
108 |
tacatttattacattttgaatcatcaactataataaccacatgtgaattctcaatcttaggatctggttcagcacattcacaagttggagattgtgacac |
207 |
Q |
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| T |
18533720 |
tacatttattacattttgaatcatcaactataataaccacatgtgaattctcaatcttaggatctggttcagcacattcacaagttggagattgtgacac |
18533621 |
T |
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| Q |
208 |
ttctttaggtgatttttcatctgtttcatcaacatcaaaatttatgattgaagcaagaacattagcagaatcagctatttcctcagtgcaatcaacaata |
307 |
Q |
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| T |
18533620 |
ttctttaggtaatttttcatttgtttcatcaacaacaaaatttatgattgaagcaagaacattagcagaatcagctatttcctcagtgcaatcaacaata |
18533521 |
T |
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| Q |
308 |
tcaatcagtaatgaagcaactgtcacagctggtataactgataaaagatctgcttctttccataaacttgattgaagcaatgagttaaggctttttactg |
407 |
Q |
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| T |
18533520 |
tcaattagtaatgaagcaactgtcacagctggtataactgataaaagatctgcttctttccataaacttgattgaagcaatgagttaaggctttttactg |
18533421 |
T |
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| Q |
408 |
cggctttcgcgtttgcgacgtgagtttctggtgatgagtttcttgtcattgtttttattgatgaactcaattgtttcaaagccatgcttgattctaaaca |
507 |
Q |
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| T |
18533420 |
cggcttttgcgtttgcgacgtgagtttctggtgatgagtttcttgtcattgtttttattgatgaactcaattgtttcaaagccatgcttgattctaaaca |
18533321 |
T |
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| Q |
508 |
catttctgtgcatagttcttggattgtactacgaatttcgtgtgatccctacatacaacaaaacattgcgtcaaattaataagcacgtgctc |
599 |
Q |
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| T |
18533320 |
catttctgtgcatagttcttggattgtactacgaatttcgtgtgatccctacatacaacaaaacattgcgtcaaattaataagcacgtgctc |
18533229 |
T |
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