View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1313-Insertion-3 (Length: 484)

Name: NF1313-Insertion-3
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1313-Insertion-3
NF1313-Insertion-3
[»] chr3 (1 HSPs)
chr3 (8-484)||(50026778-50027254)


Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 8 - 484
Target Start/End: Complemental strand, 50027254 - 50026778
Alignment:
Q  8 atcttcactccttgaggggaaccaaaggagttgggatagttgcaaagttggtctaagtattgttgaatctttggaagattgtaactgttctaggttttgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50027254 atcttcactccttgaggggaaccaaaggagttgggatagttgcaaagttggtctaagtattgttgaatctttggaagattgtaactgttctaggttttgt 50027155  T
Q  108 gggaaaattcttcaatcacctgatagcaagggcattagtctaagtcctcaatctatgatcaaaactccaatttgtgaaacttgtatggattcttttgagt 207  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50027154 gggaaaattcttcaatcacttgatagcaagggcattagtctaagtcctcaatctatgatcaaaactccaatttgtgaaacttgtatggattcttttgagt 50027055  T
Q  208 catcgtctaagtctttgcctaaagattttggtaaggtagttccttgtgtagaagatggatctgttatccaaaagggtgaatgtgagtccaatgtcctttt 307  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50027054 cgtcgtctaagtctttgcctaaagattttggtaaggtggttccttgtgtagaagatggatctgttatccaaaagggtgaatgtgagtccaatgtcctttt 50026955  T
Q  308 tgagattggtgaaactagcttagagcatgatgaaccatttgggagaactaggtcatgttcattggattcatgcaaatcaatgaaagctgattttggatta 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50026954 tgagattggtgaaactagcttagagcatgatgaaccatttgggagaactaggtcatgttcattggattcatgcaaatcaatgaaagctgattttggatta 50026855  T
Q  408 gccacttcaaaaactgattctgatatcgatgattttgctatgaaagatgtcacagttcaggttagctcttctcctca 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50026854 gccacttcaaaaactgattctgatatcgatgattttgctatgaaagatgtcacagttcaggttagctcttctcctca 50026778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University