View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1313-Insertion-4 (Length: 295)

Name: NF1313-Insertion-4
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1313-Insertion-4
NF1313-Insertion-4
[»] chr7 (7 HSPs)
chr7 (8-216)||(4866319-4866527)
chr7 (211-295)||(4873721-4873805)
chr7 (190-295)||(1751556-1751660)
chr7 (35-130)||(9046572-9046678)
chr7 (204-276)||(6531857-6531930)
chr7 (48-86)||(35103696-35103734)
chr7 (10-40)||(35937269-35937299)
[»] chr3 (1 HSPs)
chr3 (95-211)||(6461913-6462029)
[»] chr4 (4 HSPs)
chr4 (100-293)||(36709123-36709316)
chr4 (190-289)||(17465491-17465588)
chr4 (230-293)||(17295115-17295178)
chr4 (39-80)||(12634139-12634180)
[»] chr1 (7 HSPs)
chr1 (184-289)||(3362971-3363075)
chr1 (190-286)||(7839907-7840003)
chr1 (38-86)||(28553762-28553810)
chr1 (10-41)||(26626424-26626455)
chr1 (10-41)||(49117665-49117696)
chr1 (37-86)||(17734722-17734771)
chr1 (90-138)||(898463-898511)
[»] chr5 (2 HSPs)
chr5 (190-295)||(4237280-4237386)
chr5 (236-276)||(19222611-19222651)
[»] chr2 (3 HSPs)
chr2 (194-291)||(21515753-21515848)
chr2 (108-249)||(35406946-35407088)
chr2 (229-291)||(21511339-21511401)
[»] scaffold0148 (1 HSPs)
scaffold0148 (198-295)||(13164-13261)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 4866319 - 4866527
Alignment:
Q  8 cagctgcagagctagtagtggcatgtaaagcttgattatcattgagatacactcatgtattctgaaagaaaacatgaaaatattgtgtttagaaatgaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4866319 cagctgcagagctagtagtggcatgtaaagcttgattatcattgagatacactcatgtattctgaaagaaaacatgagaatattgtgtttagaaatgaat 4866418  T
Q  108 ttaacataagatagagatatagacttggaattgttagtatttatcgttaagatctaacaacaatcctaaggcttctttataaaatctgaatttaaacaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4866419 ttaacataagatagagatatagacttggaattgttagtatttatcgttaagatctaacaacaatcctaaggctactttataaaatctgaatttaaacaaa 4866518  T
Q  208 gaaactatt 216  Q
    |||||||||    
T  4866519 gaaactatt 4866527  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 211 - 295
Target Start/End: Original strand, 4873721 - 4873805
Alignment:
Q  211 actattgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtggaacga 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4873721 actattgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtagaacga 4873805  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 190 - 295
Target Start/End: Original strand, 1751556 - 1751660
Alignment:
Q  190 aatctgaatttaaacaaagaaactattgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtg 289  Q
    ||||||||||| ||| |||||||||||  |||| ||| |||| |||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||    
T  1751556 aatctgaattttaaccaagaaactattcgacttctaa-acttgatcttttctgctaatcaacattgaaaacgaaatcggtaattacaataactctctgtg 1751654  T
Q  290 gaacga 295  Q
    ||||||    
T  1751655 gaacga 1751660  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 130
Target Start/End: Original strand, 9046572 - 9046678
Alignment:
Q  35 aagcttgattatcattgagatacactcatgtattctgaaagaaaacatgaa-----------aatattgtgtttagaaatgaatttaacataagatagag 123  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||           |||||||| |||||||| ||||||||||||| ||||||    
T  9046572 aagcttgattatcattgagatacattcatgtattctgaaaggaaacatgaaatgcaaaagagaatattgtctttagaaacgaatttaacataaaatagag 9046671  T
Q  124 atataga 130  Q
    |||||||    
T  9046672 atataga 9046678  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 6531857 - 6531930
Alignment:
Q  204 caaagaaactattgaactt-ttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattaca 276  Q
    ||||||||||||||||||| |||||  | |||| |||||||||||||| ||||||||  ||||| |||||||||    
T  6531857 caaagaaactattgaacttcttaatcttaaatcatttcagctaatcataattgaaaagaaaatcggtaattaca 6531930  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 35103734 - 35103696
Alignment:
Q  48 attgagatacactcatgtattctgaaagaaaacatgaaa 86  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  35103734 attgaaatacattcatgtattctgaaagaaaacatgaaa 35103696  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 40
Target Start/End: Original strand, 35937269 - 35937299
Alignment:
Q  10 gctgcagagctagtagtggcatgtaaagctt 40  Q
    |||||||||||||||||||||||||||||||    
T  35937269 gctgcagagctagtagtggcatgtaaagctt 35937299  T

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Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 95 - 211
Target Start/End: Original strand, 6461913 - 6462029
Alignment:
Q  95 tttagaaatgaatttaacataagatagagatatagacttggaattgttagtatttatcgttaagatctaacaacaatcctaaggcttctttataaaatct 194  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| || ||||||||| |  ||| ||||||| ||||||||||| |    
T  6461913 tttagaaatgaatttaatataagatagagatatagacttggaactgttagtatttatcattcagatctaaccaatatcttaaggctcctttataaaattt 6462012  T
Q  195 gaatttaaacaaagaaa 211  Q
     ||||||||| ||||||    
T  6462013 taatttaaaccaagaaa 6462029  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 293
Target Start/End: Complemental strand, 36709316 - 36709123
Alignment:
Q  100 aaatgaatttaacataagatagagatatagacttggaattgtt-agtatttatcgttaagatctaacaacaatcctaaggcttctttataaaatctgaat 198  Q
    ||||||||||||||||  |||  || ||||||  ||||||||| ||| ||| || ||||||| | || ||||||||||| | | ||||||  || |||||    
T  36709316 aaatgaatttaacatagaataaggaaatagacaaggaattgtttagtttttgtcattaagatttgaccacaatcctaagacctttttatattatatgaat 36709217  T
Q  199 ttaaacaaagaaactattgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtggaac 293  Q
    |||||| || ||| | ||||||||| |||||||||||||||||| |||| | |||||||||||||||   |||||||||||||||| ||| ||||    
T  36709216 ttaaaccaa-aaattgttgaactttgaatacttaatcttttcagataattaacattgaaaacgaaattgataattacaataactctttgtagaac 36709123  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 289
Target Start/End: Original strand, 17465491 - 17465588
Alignment:
Q  190 aatctgaatttaaacaaagaaactattgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtg 289  Q
    |||||||| |||||| |||||   |||||| | ||||| |||||||||||||||||||||||| ||||||| | ||| ||||||||  ||||||||||||    
T  17465491 aatctgaaattaaactaagaac--attgaaatcttaatccttaatcttttcagctaatcatcactgaaaacaagatcggtaattactttaactctctgtg 17465588  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 17295178 - 17295115
Alignment:
Q  230 ttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtggaac 293  Q
    |||||| |||||||||||||| |||||||| |||||| |||| |||||||||||| || |||||    
T  17295178 ttaatcatttcagctaatcataattgaaaaagaaatcggtaagtacaataactctttgaggaac 17295115  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 12634180 - 12634139
Alignment:
Q  39 ttgattatcattgagatacactcatgtattctgaaagaaaac 80  Q
    |||||||| ||||||||||| |||||||||||||||| ||||    
T  12634180 ttgattattattgagatacattcatgtattctgaaaggaaac 12634139  T

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Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 184 - 289
Target Start/End: Complemental strand, 3363075 - 3362971
Alignment:
Q  184 ttataaaatctgaatttaaacaaagaaactattgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactc 283  Q
    ||||| ||||||||||||||| || ||||| |||||  |  ||| |||||||||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  3363075 ttatataatctgaatttaaaccaa-aaactgttgaaactcgaatgcttaatcttttcagctaatcacaattgaaaacgaaatcggtaattacaataactc 3362977  T
Q  284 tctgtg 289  Q
    ||||||    
T  3362976 tctgtg 3362971  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 286
Target Start/End: Original strand, 7839907 - 7840003
Alignment:
Q  190 aatctgaatttaaacaaagaaactattgaacttttaatactt-aatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctct 286  Q
    ||||| |||||  ||||||||||||||  |||| ||| |||| || ||||||| ||||||| ||||||||||||||||  ||||||||||||||||||    
T  7839907 aatctaaattttgacaaagaaactattcgacttctaa-acttgaaccttttcaactaatcaacattgaaaacgaaatcgataattacaataactctct 7840003  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 28553762 - 28553810
Alignment:
Q  38 cttgattatcattgagatacactcatgtattctgaaagaaaacatgaaa 86  Q
    ||||||| | ||||||||||| |||||||||||||||||||||||||||    
T  28553762 cttgattgttattgagatacattcatgtattctgaaagaaaacatgaaa 28553810  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 26626424 - 26626455
Alignment:
Q  10 gctgcagagctagtagtggcatgtaaagcttg 41  Q
    ||||||||||||||||||||||||||||||||    
T  26626424 gctgcagagctagtagtggcatgtaaagcttg 26626455  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 49117696 - 49117665
Alignment:
Q  10 gctgcagagctagtagtggcatgtaaagcttg 41  Q
    ||||||||||||||||||||||||||||||||    
T  49117696 gctgcagagctagtagtggcatgtaaagcttg 49117665  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 17734771 - 17734722
Alignment:
Q  37 gcttgattatcattgagatacactcatgtattctgaaagaaaacatgaaa 86  Q
    |||||||| | ||| ||||||| |||||||||||||||| ||||||||||    
T  17734771 gcttgattgttattaagatacattcatgtattctgaaaggaaacatgaaa 17734722  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 898463 - 898511
Alignment:
Q  90 ttgtgtttagaaatgaatttaacataagatagagatatagacttggaat 138  Q
    |||| |||||||| ||||||||| ||| ||||||| |||||||||||||    
T  898463 ttgtctttagaaaagaatttaacttaaaatagagaaatagacttggaat 898511  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 295
Target Start/End: Original strand, 4237280 - 4237386
Alignment:
Q  190 aatctgaatttaaacaaagaaacta-ttgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgt 288  Q
    ||||||||||| ||| |||||| |  ||||||||  |||||||||| |||||| ||||| | ||||| |||||||||| |||||||||||||||||| ||    
T  4237280 aatctgaattttaaccaagaaaattgttgaacttcgaatacttaatattttcaactaattaacattggaaacgaaatcggtaattacaataactctccgt 4237379  T
Q  289 ggaacga 295  Q
    | |||||    
T  4237380 gaaacga 4237386  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 19222611 - 19222651
Alignment:
Q  236 ttttcagctaatcatcattgaaaacgaaatctgtaattaca 276  Q
    ||||||||||||||| |||||||| |||||| |||||||||    
T  19222611 ttttcagctaatcataattgaaaaggaaatcggtaattaca 19222651  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 291
Target Start/End: Complemental strand, 21515848 - 21515753
Alignment:
Q  194 tgaatttaaacaaagaaactattgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtgga 291  Q
    ||||||||||| |||||   |||||||| ||||| ||||||||||||||||||||||||||||||||   ||| ||||||||  ||||||||| ||||    
T  21515848 tgaatttaaaccaagaac--attgaactcttaatccttaatcttttcagctaatcatcattgaaaacatgatcagtaattactttaactctctatgga 21515753  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 249
Target Start/End: Original strand, 35406946 - 35407088
Alignment:
Q  108 ttaacataagatagagatatagacttggaattgtt-agtatttatcgttaagatctaacaacaatcctaaggcttctttataaaatctgaattt-aaaca 205  Q
    ||||||||| |||||||||||||   ||||||||| ||||||| || |||  ||   || ||||||||||| | ||||||||| |||||||||| ||||     
T  35406946 ttaacataaaatagagatatagatagggaattgtttagtatttgtcattacaattagaccacaatcctaagacctctttataatatctgaatttaaaacc 35407045  T
Q  206 aagaaactattgaacttttaatacttaatcttttcagctaatca 249  Q
    || |||| ||||||||| ||| |||| |||||||||||||||||    
T  35407046 aacaaaccattgaacttataa-acttgatcttttcagctaatca 35407088  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 21511401 - 21511339
Alignment:
Q  229 cttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtgga 291  Q
    |||||||||||||||||| ||||||||||||| | ||| ||||||||  ||||||| ||||||    
T  21511401 cttaatcttttcagctaagcatcattgaaaacaagatcggtaattactttaactctatgtgga 21511339  T

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Target: scaffold0148 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 295
Target Start/End: Original strand, 13164 - 13261
Alignment:
Q  198 tttaaacaaagaaactattgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtggaacga 295  Q
    ||||| ||||||||||||||||||| | |  ||||||| ||||| |||||||| | | | || |||||| ||||| | || ||||||||| |||||||    
T  13164 tttaatcaaagaaactattgaacttctgaaccttaatcatttcaactaatcataactaagaaagaaatcggtaatcaaaacaactctctgaggaacga 13261  T

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