View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1313-Insertion-6 (Length: 829)

Name: NF1313-Insertion-6
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1313-Insertion-6
NF1313-Insertion-6
[»] chr7 (13 HSPs)
chr7 (6-312)||(45938314-45938616)
chr7 (439-618)||(32971401-32971576)
chr7 (499-589)||(35738005-35738094)
chr7 (496-650)||(21378366-21378526)
chr7 (499-605)||(27226767-27226872)
chr7 (518-616)||(31136385-31136483)
chr7 (518-618)||(12471576-12471674)
chr7 (518-579)||(49124462-49124523)
chr7 (499-579)||(12470104-12470184)
chr7 (499-590)||(3996813-3996904)
chr7 (369-479)||(25545176-25545286)
chr7 (404-485)||(12012903-12012984)
chr7 (391-484)||(19602275-19602368)
[»] chr3 (10 HSPs)
chr3 (375-618)||(11503160-11503399)
chr3 (499-618)||(44681835-44681957)
chr3 (388-585)||(26757719-26757908)
chr3 (499-600)||(28550670-28550771)
chr3 (374-600)||(44471129-44471345)
chr3 (395-589)||(23659517-23659703)
chr3 (387-484)||(779461-779559)
chr3 (374-435)||(30554552-30554613)
chr3 (395-484)||(33231474-33231563)
chr3 (529-618)||(44285800-44285889)
[»] chr8 (7 HSPs)
chr8 (364-600)||(32321901-32322128)
chr8 (374-618)||(3767500-3767730)
chr8 (369-484)||(16570826-16570941)
chr8 (374-614)||(9040524-9040754)
chr8 (518-618)||(20860220-20860320)
chr8 (518-614)||(25343956-25344052)
chr8 (517-618)||(3555258-3555358)
[»] chr4 (7 HSPs)
chr4 (611-824)||(55106907-55107120)
chr4 (500-605)||(8605987-8606092)
chr4 (364-482)||(53393121-53393239)
chr4 (387-543)||(8056837-8056986)
chr4 (499-618)||(42141467-42141583)
chr4 (518-605)||(13207242-13207329)
chr4 (424-481)||(19682036-19682093)
[»] chr6 (9 HSPs)
chr6 (364-600)||(9826839-9827065)
chr6 (499-618)||(23300644-23300763)
chr6 (369-434)||(26186695-26186760)
chr6 (535-618)||(26186546-26186629)
chr6 (369-494)||(11846347-11846472)
chr6 (499-594)||(1208785-1208880)
chr6 (499-618)||(11971637-11971756)
chr6 (419-494)||(32613806-32613881)
chr6 (439-484)||(20722413-20722458)
[»] chr2 (12 HSPs)
chr2 (362-585)||(5526316-5526529)
chr2 (499-575)||(28199805-28199881)
chr2 (499-618)||(3689948-3690062)
chr2 (364-480)||(29109130-29109246)
chr2 (499-618)||(22848047-22848166)
chr2 (499-618)||(30340596-30340715)
chr2 (518-618)||(30906680-30906780)
chr2 (669-733)||(38607366-38607429)
chr2 (525-605)||(41068649-41068729)
chr2 (499-618)||(37630555-37630669)
chr2 (500-579)||(38607198-38607276)
chr2 (518-579)||(29109041-29109102)
[»] chr5 (2 HSPs)
chr5 (499-597)||(1498055-1498153)
chr5 (518-618)||(17770458-17770558)
[»] chr1 (3 HSPs)
chr1 (499-585)||(4919628-4919714)
chr1 (395-494)||(32678410-32678509)
chr1 (666-708)||(16584617-16584659)
[»] scaffold0070 (2 HSPs)
scaffold0070 (499-614)||(33950-34065)
scaffold0070 (386-614)||(13870-14088)
[»] scaffold0590 (1 HSPs)
scaffold0590 (387-494)||(8292-8399)


Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-157; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 6 - 312
Target Start/End: Complemental strand, 45938616 - 45938314
Alignment:
Q  6 caagaacaataacaaacattgacatatgacatatgaccaccaaccaactaggccacccacgaactaaaaagtatggatgcattttgaatggatggatatt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||    
T  45938616 caagaacaataacaaacattgacatatgacatatgaccaccaaccaactaggccacccacgaactaaaaagtatggatgcattttgaatggat----att 45938521  T
Q  106 tacatcaacaatcacttaagaaggttagacatctctttggtgtagtgccgtttggtctgtttggttattgcggaattggataattttcttacaagttatt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45938520 tacatcaacaatcacttaagaaggttagacatctctttggtgtagtgccgtttggtctgtttggttattgcggaattggataattttcttacaagttatt 45938421  T
Q  206 tgaatttcgaaccctaaacattatttcatttaatcccttagctcaattaaatgagttatacatccctcctatattgtgccggtctaaatgttcaaataaa 305  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45938420 tgaatttcgaaccctaaacattaattcatttaatcccttagctcaattaagtgagttatacatccctcctatattgtgccggtctaaatgttcaaataaa 45938321  T
Q  306 gataact 312  Q
    |||||||    
T  45938320 gataact 45938314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 439 - 618
Target Start/End: Original strand, 32971401 - 32971576
Alignment:
Q  439 aaccgatgctaaccccacttttcattttactaatattatccctcctaacccacactaacccacacttatgattagacctaaaattgaagtccaacataaa 538  Q
    |||||||||||||| |||| | ||||||   ||||||||||||||| || |||||     ||||||||||||||| |  |||||| ||||||||||||||    
T  32971401 aaccgatgctaacctcactctccatttttgaaatattatccctcctcacacacaca----cacacttatgattaggctcaaaattaaagtccaacataaa 32971496  T
Q  539 atactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaactctattttatttacactaaaaaaga 618  Q
     ||||| ||  |||||| || | ||   ||||||||||||| |||||||||||||||||||||||||   ||||||||||    
T  32971497 ctactctttaatccattcacctacttcaatcatcatctcatctcatcactcaaactctattttatttcttctaaaaaaga 32971576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 499 - 589
Target Start/End: Complemental strand, 35738094 - 35738005
Alignment:
Q  499 cacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactc 589  Q
    ||||||||||||||| || |||||| || ||||||||||||||||||||  |||||| |||| ||| |||||||||||||| |||||||||    
T  35738094 cacacttatgattaggcccaaaattaaattccaacataaaatactccttaatccattcactt-ctcccatcatcatctcatctcatcactc 35738005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 496 - 650
Target Start/End: Complemental strand, 21378526 - 21378366
Alignment:
Q  496 acccacacttatgattagacctaaaattgaagtccaa-cataaaatactccttggtccatttacttcctctcatcatcatctcatat-----catcactc 589  Q
    ||||||| ||| | |||| |||||| || |||||||| | ||||||| | |||  ||||||||||| |||  ||||||||||||| |     ||||| ||    
T  21378526 acccacatttacgtttaggcctaaatttaaagtccaatcgtaaaataattcttaatccatttactttctccgatcatcatctcattttatctcatcattc 21378427  T
Q  590 aaactctattttatttacactaaaaaagagaaacccaagccgccacctacccccaacccat 650  Q
    ||||| ||||||||||  |||||||||||||||||| | ||||||||||||| ||||||||    
T  21378426 aaactttattttatttgtactaaaaaagagaaaccctaaccgccacctaccctcaacccat 21378366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 499 - 605
Target Start/End: Complemental strand, 27226872 - 27226767
Alignment:
Q  499 cacacttatgattagacctaaaattgaagtcc-aacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaactcta 597  Q
    ||||||||||||||| ||||||||| |||||| |||||||| ||||| |   |||||| | ||| ||||||||||||||||| | |||||||| ||||||    
T  27226872 cacacttatgattaggcctaaaatt-aagtcccaacataaagtactcttgaatccattgatttc-tctcatcatcatctcatctaatcactcagactcta 27226775  T
Q  598 ttttattt 605  Q
    ||||||||    
T  27226774 ttttattt 27226767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 518 - 616
Target Start/End: Original strand, 31136385 - 31136483
Alignment:
Q  518 aaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaactctattttatttacactaaaaaa 616  Q
    |||||| |||||||||||||||||||||||  | |||| |||| |||  |||||||||| || |||||||||| ||||||||  ||||  |||||||||    
T  31136385 aaaattaaagtccaacataaaatactccttaattcattcactttctcctatcatcatcttatctcatcactcacactctattccatttctactaaaaaa 31136483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 518 - 618
Target Start/End: Complemental strand, 12471674 - 12471576
Alignment:
Q  518 aaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaactctattttatttacactaaaaaag 617  Q
    |||||| |||| || ||||||||||||||| ||  | | |||| ||| |||||||||||||| |||||||||  |||||||||| |||  ||||||||||    
T  12471674 aaaattaaagttcaccataaaatactcctttgtttactcactttctcccatcatcatctcatctcatcactc--actctattttgtttctactaaaaaag 12471577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 518 - 579
Target Start/End: Original strand, 49124462 - 49124523
Alignment:
Q  518 aaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcat 579  Q
    |||||| |||||||||||||| |||||||| || |||| |||| ||| ||||||||||||||    
T  49124462 aaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcat 49124523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 499 - 579
Target Start/End: Complemental strand, 12470184 - 12470104
Alignment:
Q  499 cacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcat 579  Q
    |||||||||||||  ||  |||||| |||||||||||||||||||| ||| | |||| |||  ||| ||||||||||||||    
T  12470184 cacacttatgattcaactcaaaattaaagtccaacataaaatactctttgattcattcactctctcccatcatcatctcat 12470104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 499 - 590
Target Start/End: Complemental strand, 3996904 - 3996813
Alignment:
Q  499 cacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactca 590  Q
    ||||||||||||||  || |||||| ||||| | ||||||||||| |||    |||| |||| ||||| |||||||||||| ||||||||||    
T  3996904 cacacttatgattatgcccaaaattaaagtcaagcataaaatacttcttaagtcattcactttctctcgtcatcatctcatttcatcactca 3996813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 369 - 479
Target Start/End: Complemental strand, 25545286 - 25545176
Alignment:
Q  369 caacttaaaccgttctgatttggtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccacttttcattttac 468  Q
    |||| ||||||| |||  |||||||||||||||   |||| ||||| |||||||||||||  |||||   |||| ||||||||| ||||   |||||||     
T  25545286 caacctaaaccgatctagtttggtttggttctcaacttttaattttaaaatccaaagaaccaatgaatcgaaccaatgctaacctcactccccattttag 25545187  T
Q  469 taatattatcc 479  Q
    |||||||||||    
T  25545186 taatattatcc 25545176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 404 - 485
Target Start/End: Complemental strand, 12012984 - 12012903
Alignment:
Q  404 tttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccacttttcattttactaatattatccctccta 485  Q
    ||||| ||||| ||||||||||||| ||| |||  ||||| |||||||| |||   |||||||| ||| |||||||||||||    
T  12012984 tttttaattttaaaatccaaagaaccgataaaccgaaccggtgctaacctcacccctcattttagtaagattatccctccta 12012903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 484
Target Start/End: Complemental strand, 19602368 - 19602275
Alignment:
Q  391 gtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccacttttcattttactaatattatccctcct 484  Q
    ||||| ||| || ||||| ||||| | ||||||||||| ||||||   ||| |||||||||| ||||| |||| ||||||||||| || |||||    
T  19602368 gtttgattcacggttttttattttgagatccaaagaacagatgaatcgaacagatgctaacctcacttctcatattactaatattttctctcct 19602275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 375 - 618
Target Start/End: Complemental strand, 11503399 - 11503160
Alignment:
Q  375 aaaccgttctgatttggtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccacttttcattttactaatat 474  Q
    |||||| ||| ||||||||||||||||| ||||| ||||| | ||||||  ||| ||| |||  |||| ||||||||| ||||   |||||||||| |||    
T  11503399 aaaccgatcttatttggtttggttctcgatttttcattttgagatccaagaaaccgataaaccgaacccatgctaacctcactccccattttactattat 11503300  T
Q  475 tatccctcctaacccacactaacccacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcat 574  Q
    |||||||||| || |||||     ||||||||||||||   | |||||| ||| ||||||||||||||| | |  |||||| ||||||||||||  | ||    
T  11503299 tatccctcctcacacacaca----cacacttatgattatgtccaaaattaaagcccaacataaaatactacataatccattcacttcctctcatactaat 11503204  T
Q  575 ctcatatcatcactcaaactctattttatttacactaaaaaaga 618  Q
    ||||| |||||||||| ||||||||| ||||  |||||||||||    
T  11503203 ctcatctcatcactcagactctatttcatttctactaaaaaaga 11503160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 499 - 618
Target Start/End: Complemental strand, 44681957 - 44681835
Alignment:
Q  499 cacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctc---tcatcatcatctcatatcatcactcaaactc 595  Q
    ||||||||||||||  |  |||||| |||||||||||||||||||||||  | ||||||||| |||   ||||||||||||||| |||||||||| | ||    
T  44681957 cacacttatgattaagctcaaaattaaagtccaacataaaatactccttaattcatttactttctcccatcatcatcatctcatctcatcactcataatc 44681858  T
Q  596 tattttatttacactaaaaaaga 618  Q
    |||||  |||| |||||||||||    
T  44681857 tatttcgtttatactaaaaaaga 44681835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 388 - 585
Target Start/End: Original strand, 26757719 - 26757908
Alignment:
Q  388 ttggtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccacttttcattttactaatattatccctcctaac 487  Q
    |||||| |||||| |  |||| ||||| | ||||||||||  ||| |||| |||||||  ||||| |||| | ||||||| ||||||||||| |||        
T  26757719 ttggttcggttcttggattttaattttgagatccaaagaatcgataaactgaaccgatagtaacctcactctccattttagtaatattatccttcc---- 26757814  T
Q  488 ccacactaacccacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatc 585  Q
      ||||  || ||||||||||||||  |  |||||| |||| ||||||||||||||||||  | |||| |||| |||||||||||||||||| |||||    
T  26757815 --acac--acacacacttatgattaagctcaaaattaaagttcaacataaaatactccttaattcattcactttctctcatcatcatctcatctcatc 26757908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 499 - 600
Target Start/End: Original strand, 28550670 - 28550771
Alignment:
Q  499 cacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaactctat 598  Q
    |||||||||||||| ||  |||||| ||||||||| ||||||||| ||   | |||| |||| ||| |||||||||||||| |||||||||| | |||||    
T  28550670 cacacttatgattaaactcaaaattaaagtccaacgtaaaatacttctcaattcattcactttctcccatcatcatctcatctcatcactcacattctat 28550769  T
Q  599 tt 600  Q
    ||    
T  28550770 tt 28550771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 374 - 600
Target Start/End: Original strand, 44471129 - 44471345
Alignment:
Q  374 taaaccgttctgatttggtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccacttttcattttactaata 473  Q
    ||||||| |||  ||||||| |||||| | ||||| ||||| ||||||||||||| |||||||  |||||||||||||   |||   || |||| |||||    
T  44471129 taaaccgatctagtttggttcggttcttggtttttaattttgaaatccaaagaaccgatgaaccgaaccgatgctaacataactccccagtttagtaata 44471228  T
Q  474 ttatccctcctaacccacactaacccacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatca 573  Q
    ||||||||||| |        |||  |||||||||||||  |  |||||| ||| | ||||||||||||||| |  | |||| |||| ||| ||| ||||    
T  44471229 ttatccctcctca--------aac--acacttatgattaagctcaaaattaaaggctaacataaaatactccataattcattcactttctcccattatca 44471318  T
Q  574 tctcatatcatcactcaaactctattt 600  Q
    ||||||  ||||||||| |||||||||    
T  44471319 tctcatcacatcactcacactctattt 44471345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 589
Target Start/End: Original strand, 23659517 - 23659703
Alignment:
Q  395 ggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccacttttcattttactaatattatccctcctaacccacact 494  Q
    |||||| | ||||| ||||| | |||||| |||| | |||||  |||||||||||||  |||| | ||||||| |||||||||||||||| ||           
T  23659517 ggttcttggtttttaattttgagatccaatgaaccggtgaaccgaaccgatgctaacatcactctccattttagtaatattatccctcctcac------- 23659609  T
Q  495 aacccacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactc 589  Q
     || ||||||||| ||||  |  |||||| |||||||||||||||||||||||  | |||| |||| ||   |||||||||| || |||||||||    
T  23659610 -acacacacttataattaagctcaaaattaaagtccaacataaaatactccttaattcattcactttctactatcatcatcttatctcatcactc 23659703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 387 - 484
Target Start/End: Complemental strand, 779559 - 779461
Alignment:
Q  387 tttggtttggttctcgctttttgattttt-aaatccaaagaactgatgaactcaaccgatgctaaccccacttttcattttactaatattatccctcct 484  Q
    ||||||| |||||| | ||||| |||||| ||||||||||||| |||||||  |||||||||||| | |||| | ||||||  ||||| |||| |||||    
T  779559 tttggttcggttcttggtttttaatttttgaaatccaaagaaccgatgaaccgaaccgatgctaatctcactctccatttttgtaatactatcactcct 779461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 435
Target Start/End: Complemental strand, 30554613 - 30554552
Alignment:
Q  374 taaaccgttctgatttggtttggttctcgctttttgatttttaaatccaaagaactgatgaa 435  Q
    ||||||| |||  ||||||| |||||||| ||||| ||||| | ||||||||||||||||||    
T  30554613 taaaccgatctagtttggttcggttctcgatttttaattttgatatccaaagaactgatgaa 30554552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 395 - 484
Target Start/End: Complemental strand, 33231563 - 33231474
Alignment:
Q  395 ggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccacttttcattttactaatattatccctcct 484  Q
    |||||| | ||||| ||||| |||| | |||||| |||||||  |||||||||||||| ||||   ||||||| ||||||||| ||||||    
T  33231563 ggttcttggtttttaattttgaaattcgaagaaccgatgaaccgaaccgatgctaacctcactccccattttagtaatattatacctcct 33231474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 529 - 618
Target Start/End: Original strand, 44285800 - 44285889
Alignment:
Q  529 ccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaactctattttatttacactaaaaaaga 618  Q
    ||||||||||||||||| |  | |||| |||| ||| ||||||| |||||| |||||| ||| |||||||||  |||  |||||||||||    
T  44285800 ccaacataaaatactccataattcattcactttctcccatcatcgtctcatctcatcattcacactctatttcgtttctactaaaaaaga 44285889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 6e-24; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 364 - 600
Target Start/End: Original strand, 32321901 - 32322128
Alignment:
Q  364 cgaagcaacttaaaccgttctgatttggtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccacttttcat 463  Q
    |||| |||| ||||||| ||| |||||||| |||||||| ||||| ||||| | || ||| |||| ||| |||  |||| ||||||||| |||| | |||    
T  32321901 cgaatcaacataaaccgatctaatttggttcggttctcggtttttaattttaagattcaatgaaccgataaaccaaaccaatgctaacctcactctccat 32322000  T
Q  464 tttactaatattatccctcctaacccacactaacccacacttatgattagacctaaa-attgaagtccaacataaaatactccttggtccatttacttcc 562  Q
    |||| |||||||||| |||||    |||||      ||||||||||||| | || || ||| |||||||||||||||||||||||  | ||||||||| |    
T  32322001 tttagtaatattatctctcct----cacac------acacttatgattaaaactcaagattaaagtccaacataaaatactccttaattcatttactttc 32322090  T
Q  563 tctcatcatcatctcatatcatcactcaaactctattt 600  Q
    || |||||||||||||| |||||||||| | |||||||    
T  32322091 tcccatcatcatctcatgtcatcactcacagtctattt 32322128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 374 - 618
Target Start/End: Complemental strand, 3767730 - 3767500
Alignment:
Q  374 taaaccgttctgatttggtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccacttttcattttactaata 473  Q
    ||||||| |||  |||||||||||||||| ||||| ||||| | |||||| |||| |||||||  |||||||||||||| ||||   ||||||| |||||    
T  3767730 taaaccgatctagtttggtttggttctcggttttttattttgagatccaatgaaccgatgaaccgaaccgatgctaacctcactccccattttagtaata 3767631  T
Q  474 ttatccctcctaacccacactaacccacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatca 573  Q
    |||||||| || || |||||           |||||||| ||  |||||| ||||||||||||||||  |||||  |||||| |||| ||| ||| ||||    
T  3767630 ttatcccttctcacacacac-----------tatgattaaactcaaaattaaagtccaacataaaattatccttaatccattcactttctcccat-atca 3767543  T
Q  574 tctcatatcatcactcaaactctattttatttacactaaaaaaga 618  Q
    |||||| |||||||||  | | ||||| ||||| |||||||||||    
T  3767542 tctcatctcatcactc--agtgtatttcatttaaactaaaaaaga 3767500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 369 - 484
Target Start/End: Complemental strand, 16570941 - 16570826
Alignment:
Q  369 caacttaaaccgttctgatttggtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccacttttcattttac 468  Q
    |||| ||||||| ||| |||||||| |||||||| ||||| ||||| | ||||||||||| |||||||| |||||||||||||  ||||   |||||||     
T  16570941 caacctaaaccgatctaatttggttaggttctcgatttttaattttgagatccaaagaaccgatgaactgaaccgatgctaacttcactccccattttag 16570842  T
Q  469 taatattatccctcct 484  Q
    || |||||||||||||    
T  16570841 tattattatccctcct 16570826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 374 - 614
Target Start/End: Original strand, 9040524 - 9040754
Alignment:
Q  374 taaaccgttctgatttggtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccacttttcattttactaata 473  Q
    ||||||| |||  |||||||||||||||| ||||| ||||| | ||| ||  ||| |||||||  |   ||||||||||||||||  |||||||||| ||    
T  9040524 taaaccgatcttgtttggtttggttctcggtttttcattttgagatctaagaaaccgatgaaccgagttgatgctaaccccacttcccattttactatta 9040623  T
Q  474 ttatccctcctaacccacactaacccacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatca 573  Q
    |||||||||||    |||||      |||||||||||||| |  |||||| |||  ||| |||||||||| |||  | |||| |||| ||| ||| ||||    
T  9040624 ttatccctcct----cacac------acacttatgattaggctcaaaattaaagctcaagataaaatactacttaattcattcactttctcccattatca 9040713  T
Q  574 tctcatatcatcactcaaactctattttatttacactaaaa 614  Q
    |||||| |||||||||| ||||||||| ||||  |||||||    
T  9040714 tctcatctcatcactcagactctatttcatttctactaaaa 9040754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 518 - 618
Target Start/End: Complemental strand, 20860320 - 20860220
Alignment:
Q  518 aaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaactctattttatttacactaaaaaag 617  Q
    |||||| ||||| |||||||||||||||||  || ||| |||| ||||||||||| |||||| | ||||| || |||||||||  |||| ||||||||||    
T  20860320 aaaattaaagtcgaacataaaatactccttaatctattcactttctctcatcatcgtctcatctaatcacccacactctatttcttttatactaaaaaag 20860221  T
Q  618 a 618  Q
    |    
T  20860220 a 20860220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 518 - 614
Target Start/End: Complemental strand, 25344052 - 25343956
Alignment:
Q  518 aaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaactctattttatttacactaaaa 614  Q
    |||||| ||| |||||||||| |||| |||  |||||| |||| ||| |||||||||||||| |||||||||| |||| |||| ||||  |||||||    
T  25344052 aaaattaaagcccaacataaagtactacttaatccattcactttctcccatcatcatctcatgtcatcactcagactcgatttcatttctactaaaa 25343956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 517 - 618
Target Start/End: Complemental strand, 3555358 - 3555258
Alignment:
Q  517 taaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaactctattttatttacactaaaaaa 616  Q
    ||||||| |||| ||||||||||||||| ||  || ||| |||| |||||||||| ||||||| |||||||||| || |||||| | ||  |||||||||    
T  3555358 taaaattaaagttcaacataaaatactcattaatc-attcactttctctcatcattatctcatctcatcactcacacactatttcacttctactaaaaaa 3555260  T
Q  617 ga 618  Q
    ||    
T  3555259 ga 3555258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 611 - 824
Target Start/End: Original strand, 55106907 - 55107120
Alignment:
Q  611 aaaaaagagaaacccaagccgccacctacccccaacccatcgtttctcaatgattctgagattgaccat--ctcttggttagttttttcatgtttatgcc 708  Q
    ||||||||||||||  |||||||   |||||||||||||| |||||||| || |  |||||||| | ||  |||||||||| |||||||||||| |||||    
T  55106907 aaaaaagagaaaccatagccgcc---tacccccaacccattgtttctcactgttgttgagattgtctatatctcttggttaattttttcatgtt-atgcc 55107002  T
Q  709 ttgaaacttttg-gaaaaatattgttctatgccttattttatactcattatatgtcttaattta-tgctcgtttcctgccttgaaaaatatcgttttatt 806  Q
    ||||||||||   |||| |||  ||  ||||||||  |||||| || ||  |||  |||||||| || ||||||||||||||||||||||| |||||| |    
T  55107003 ttgaaactttaaagaaagatacggtattatgccttgatttataatcgttgcatgcattaatttaatgttcgtttcctgccttgaaaaatattgttttagt 55107102  T
Q  807 ttggttcagtttgtgttt 824  Q
    ||||||||||||||||||    
T  55107103 ttggttcagtttgtgttt 55107120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 500 - 605
Target Start/End: Complemental strand, 8606092 - 8605987
Alignment:
Q  500 acacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaactctatt 599  Q
    |||||||| ||||| || |||||| |||||||||||||||||||||||  | |||| |||| |||  |||||||| |||| |||||||||||||||||||    
T  8606092 acacttattattaggcccaaaattaaagtccaacataaaatactccttaattcattcactttctcctatcatcatttcatctcatcactcaaactctatt 8605993  T
Q  600 ttattt 605  Q
    | ||||    
T  8605992 tcattt 8605987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 364 - 482
Target Start/End: Complemental strand, 53393239 - 53393121
Alignment:
Q  364 cgaagcaacttaaaccgttctgatttggtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccacttttcat 463  Q
    |||| |||| ||||||| |||  ||||||| |||||||| ||| | | ||| |||||||| |||| |||||||  |||||||||||||| |||||| |||    
T  53393239 cgaaccaacctaaaccgatctagtttggttcggttctcggtttataactttgaaatccaatgaaccgatgaaccgaaccgatgctaacctcactttccat 53393140  T
Q  464 tttactaatattatccctc 482  Q
    |||| ||||||||||||||    
T  53393139 tttagtaatattatccctc 53393121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 387 - 543
Target Start/End: Original strand, 8056837 - 8056986
Alignment:
Q  387 tttggtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccacttttcattttactaatattatccctcctaa 486  Q
    ||||||| |||||||| ||||  ||||| | ||||||  ||| |||||||| ||||||| |||||||||||   ||||||||||||||||||| |||| |    
T  8056837 tttggttcggttctcgattttc-attttgagatccaagaaaccgatgaactgaaccgatcctaaccccactccccattttactaatattatccttcctca 8056935  T
Q  487 cccacactaacccacacttatgattagacctaaaattgaagtccaacataaaatact 543  Q
    | ||||      |||||||||||  ||||| |||||| ||||| ||| |||||||||    
T  8056936 cacaca------cacacttatgaacagacccaaaattaaagtctaacgtaaaatact 8056986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 499 - 618
Target Start/End: Original strand, 42141467 - 42141583
Alignment:
Q  499 cacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaactctat 598  Q
    ||||||||||||||  |  |||||| |||||||||||||||||||||||  |  ||| |||| |||||||||||||||||| |||| ||||  |||||||    
T  42141467 cacacttatgattaatctcaaaattaaagtccaacataaaatactccttaat-gattcactttctctcatcatcatctcatctcattactc--actctat 42141563  T
Q  599 tttatttacactaaaaaaga 618  Q
    ||  |||  |||||||||||    
T  42141564 ttcttttctactaaaaaaga 42141583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 518 - 605
Target Start/End: Complemental strand, 13207329 - 13207242
Alignment:
Q  518 aaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaactctattttattt 605  Q
    |||||| ||| |||||||||||||||| ||  |||||| |||| ||   ||||||||||||| |||||||||| ||||||||| ||||    
T  13207329 aaaattaaagcccaacataaaatactcattaatccattcactttcttctatcatcatctcatctcatcactcagactctatttcattt 13207242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 481
Target Start/End: Complemental strand, 19682093 - 19682036
Alignment:
Q  424 agaactgatgaactcaaccgatgctaaccccacttttcattttactaatattatccct 481  Q
    ||||| |||||||  |||||||||||||| ||||| |||||||| |||||||||||||    
T  19682093 agaaccgatgaaccaaaccgatgctaacctcacttctcattttagtaatattatccct 19682036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 6e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 364 - 600
Target Start/End: Original strand, 9826839 - 9827065
Alignment:
Q  364 cgaagcaacttaaaccgttctgatttggtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccacttttcat 463  Q
    |||| |||| ||||||| |||  ||||||| | |||||| ||||| ||||| ||||||||||||| |||||||  ||| |||| ||||| |||||  | |    
T  9826839 cgaaccaacataaaccgatctagtttggttcgattctcggtttttaattttgaaatccaaagaaccgatgaaccaaactgatgttaacctcacttcccgt 9826938  T
Q  464 tttactaatattatccctcctaacccacactaacccacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcct 563  Q
    |||| ||||||||||||||||    ||||      ||| ||||||||||  |  || ||| |||||||||||||||||||||||  | |||| |||| ||    
T  9826939 tttagtaatattatccctcct----caca------cacgcttatgattaagctcaatattaaagtccaacataaaatactccttaattcattcactttct 9827028  T
Q  564 ctcatcatcatctcatatcatcactcaaactctattt 600  Q
    | |||||||||||||| |||||||||| | |||||||    
T  9827029 cccatcatcatctcatctcatcactcatagtctattt 9827065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 499 - 618
Target Start/End: Original strand, 23300644 - 23300763
Alignment:
Q  499 cacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaactctat 598  Q
    |||||||||||||| ||  |||||| |||||||||||||||||||||||  | | || ||||  || |||||||||||||| |||||||||| | |||||    
T  23300644 cacacttatgattaaactcaaaattaaagtccaacataaaatactccttaattctttcactttttcccatcatcatctcatctcatcactcacattctat 23300743  T
Q  599 tttatttacactaaaaaaga 618  Q
    ||  ||| ||||| ||||||    
T  23300744 ttcgtttccactataaaaga 23300763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 369 - 434
Target Start/End: Complemental strand, 26186760 - 26186695
Alignment:
Q  369 caacttaaaccgttctgatttggtttggttctcgctttttgatttttaaatccaaagaactgatga 434  Q
    |||||||||||| |||  |||||||||||||||| ||||| ||||| ||||||||||||| |||||    
T  26186760 caacttaaaccgatctagtttggtttggttctcggtttttaattttaaaatccaaagaaccgatga 26186695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 535 - 618
Target Start/End: Complemental strand, 26186629 - 26186546
Alignment:
Q  535 taaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaactctattttatttacactaaaaaaga 618  Q
    |||||||||| ||  | |||| |||| ||||||||||||||| || |||||||||| |||||||||| |||  |||||||||||    
T  26186629 taaaatactctttaattcattcactttctctcatcatcatctaatctcatcactcacactctattttgtttctactaaaaaaga 26186546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 369 - 494
Target Start/End: Original strand, 11846347 - 11846472
Alignment:
Q  369 caacttaaaccgttctgatttggtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccacttttcattttac 468  Q
    |||||||||||| |||  ||||||| |||||||| ||||| ||||| | |||||| ||||  ||||||  ||  ||||||| || ||||   |||||||     
T  11846347 caacttaaaccgatctagtttggttcggttctcggtttttaattttgagatccaatgaaccaatgaaccaaattgatgctatcctcactccccattttag 11846446  T
Q  469 taatattatccctcctaacccacact 494  Q
    |||||||||||||||| || ||||||    
T  11846447 taatattatccctcctcacacacact 11846472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 499 - 594
Target Start/End: Original strand, 1208785 - 1208880
Alignment:
Q  499 cacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaact 594  Q
    ||||||||| ||||| || |||||| |||| || ||||||||||| |||  | |||| |||| | |||||||||||||||  ||||| ||||||||    
T  1208785 cacacttatcattaggcccaaaattaaagttcagcataaaatactacttaattcattcactttccctcatcatcatctcaactcatccctcaaact 1208880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 499 - 618
Target Start/End: Original strand, 11971637 - 11971756
Alignment:
Q  499 cacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaactctat 598  Q
    ||||||||||||||  |  |||||| |||||||||||||||||||||||  | |||  |||| ||  |||||||||||||| ||||| ||||   |||||    
T  11971637 cacacttatgattaatctcaaaattaaagtccaacataaaatactccttaattcatccactttcttccatcatcatctcatctcatccctcacggtctat 11971736  T
Q  599 tttatttacactaaaaaaga 618  Q
     | ||||  |||||||||||    
T  11971737 atcatttctactaaaaaaga 11971756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 419 - 494
Target Start/End: Complemental strand, 32613881 - 32613806
Alignment:
Q  419 tccaaagaactgatgaactcaaccgatgctaaccccacttttcattttactaatattatccctcctaacccacact 494  Q
    ||||||||||||||||||  |||||||||||||| || ||  ||||||| ||||||||| | |||| || ||||||    
T  32613881 tccaaagaactgatgaaccaaaccgatgctaacctcagttcccattttaataatattattcatcctcacacacact 32613806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 484
Target Start/End: Original strand, 20722413 - 20722458
Alignment:
Q  439 aaccgatgctaaccccacttttcattttactaatattatccctcct 484  Q
    |||||||||||||||||||   ||||||||||| ||||||||||||    
T  20722413 aaccgatgctaaccccactccccattttactaacattatccctcct 20722458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 362 - 585
Target Start/End: Original strand, 5526316 - 5526529
Alignment:
Q  362 aacgaagcaacttaaaccgttctgatttggtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccacttttc 461  Q
    |||||| |||| ||||||| |||  ||||||| |||||||  ||||| ||||| | ||||||||||| |||||||  |||||||||||| | ||||   |    
T  5526316 aacgaaccaacctaaaccgatctagtttggttcggttctcagtttttaattttgagatccaaagaacagatgaaccgaaccgatgctaatctcactcccc 5526415  T
Q  462 attttactaatattatccctcctaacccacactaacccacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttc 561  Q
    |||||| || |||||||||||          || || |||||||||||||| ||  |||||| |||||||||||||||||||||||  | |||| ||||     
T  5526416 attttagtattattatccctc----------cttacacacacttatgattaaactcaaaattaaagtccaacataaaatactccttaattcattcacttt 5526505  T
Q  562 ctctcatcatcatctcatatcatc 585  Q
    || ||||||||||| ||| |||||    
T  5526506 ctgtcatcatcatcacatctcatc 5526529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 499 - 575
Target Start/End: Original strand, 28199805 - 28199881
Alignment:
Q  499 cacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatc 575  Q
    ||||||||||||||| ||||||||| |||||||||||| ||||||||||  |||||| |||| ||| ||||||||||    
T  28199805 cacacttatgattaggcctaaaattaaagtccaacatataatactccttaatccattcactttctcccatcatcatc 28199881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 499 - 618
Target Start/End: Complemental strand, 3690062 - 3689948
Alignment:
Q  499 cacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaactctat 598  Q
    ||||||||||||||  |  |||||| ||||||||| |||||||||||||    |||| |||| |||||||||||||||||| |||||||||||| | |||    
T  3690062 cacacttatgattaagctcaaaattaaagtccaacgtaaaatactcctt----cattcactttctctcatcatcatctcatctcatcactcaaagt-tat 3689968  T
Q  599 tttatttacactaaaaaaga 618  Q
    ||  |||| |||||||||||    
T  3689967 ttcgtttatactaaaaaaga 3689948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 364 - 480
Target Start/End: Complemental strand, 29109246 - 29109130
Alignment:
Q  364 cgaagcaacttaaaccgttctgatttggtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccacttttcat 463  Q
    ||||||||| ||||||  |||  |||||||||||||||| ||||| ||||| | ||||||||||| |||||||  || |||||||||||   |||  |||    
T  29109246 cgaagcaacctaaaccaatctagtttggtttggttctcggtttttaattttgagatccaaagaaccgatgaaccaaatcgatgctaaccttccttcccat 29109147  T
Q  464 tttactaatattatccc 480  Q
    |||| ||||||||||||    
T  29109146 tttagtaatattatccc 29109130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 499 - 618
Target Start/End: Complemental strand, 22848166 - 22848047
Alignment:
Q  499 cacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaactctat 598  Q
    ||||||||||||||  |  ||| || ||| ||||||||||||||||| |  | |||| |||| ||| |||||||||||||| |||||||||| ||| |||    
T  22848166 cacacttatgattaagctcaaagttaaaggccaacataaaatactccattattcattcactttctcccatcatcatctcatctcatcactcacactttat 22848067  T
Q  599 tttatttacactaaaaaaga 618  Q
    ||| |||| ||| |||||||    
T  22848066 tttgtttatacttaaaaaga 22848047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 499 - 618
Target Start/End: Original strand, 30340596 - 30340715
Alignment:
Q  499 cacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaactctat 598  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||| ||  | |||| |||| ||| ||| |||||| ||| ||||  |||  |||||||    
T  30340596 cacacttatgattagacctaaaattaaagttcaacataaaatactcttttattcattcactttctcccattatcatcacatctcattcctcggactctat 30340695  T
Q  599 tttatttacactaaaaaaga 618  Q
    || ||||   ||||||||||    
T  30340696 ttcatttcttctaaaaaaga 30340715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 518 - 618
Target Start/End: Complemental strand, 30906780 - 30906680
Alignment:
Q  518 aaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaactctattttatttacactaaaaaag 617  Q
    |||||| |||| ||||||||||||||||||  | |||| |||| |   |||||||||| ||| |||||||||| |||||||||  |||  ||||||||||    
T  30906780 aaaattaaagttcaacataaaatactccttaattcattcactttcgtccatcatcatcccatttcatcactcacactctatttcgtttctactaaaaaag 30906681  T
Q  618 a 618  Q
    |    
T  30906680 a 30906680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 669 - 733
Target Start/End: Original strand, 38607366 - 38607429
Alignment:
Q  669 agattgaccatctcttggttagttttttcatgtttatgccttgaaacttttggaaaaatattgtt 733  Q
    |||||| |||||| |||||||||||| | ||||||||||||| ||||||||| ||| ||||||||    
T  38607366 agattgtccatctattggttagttttat-atgtttatgccttcaaacttttgaaaatatattgtt 38607429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 525 - 605
Target Start/End: Complemental strand, 41068729 - 41068649
Alignment:
Q  525 aagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaactctattttattt 605  Q
    |||||||||||||||||||| ||| | ||||||| | ||  ||||  ||| | || |||||||||||||||||||||||||    
T  41068729 aagtccaacataaaatactcattgatacatttaccttcttccatctccattttatctcatcactcaaactctattttattt 41068649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 499 - 618
Target Start/End: Original strand, 37630555 - 37630669
Alignment:
Q  499 cacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaactctat 598  Q
    ||||||||||||||  |  |||||| ||||||||||| ||||||| |||  | |||| |||| ||||||||||| ||     |||||||||||| |||||    
T  37630555 cacacttatgattaagctcaaaattaaagtccaacatcaaatacttcttaattcattcactttctctcatcatcgtc-----tcatcactcaaagtctat 37630649  T
Q  599 tttatttacactaaaaaaga 618  Q
    ||| |||  |||||||||||    
T  37630650 tttgtttctactaaaaaaga 37630669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 579
Target Start/End: Original strand, 38607198 - 38607276
Alignment:
Q  500 acacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcat 579  Q
    |||||||||||||| || |||||| |||||||||||||||||||  ||  |||||| | ||  |||||||||||||||||    
T  38607198 acacttatgattaggcccaaaatt-aagtccaacataaaatactatttaatccattcattttatctcatcatcatctcat 38607276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 579
Target Start/End: Complemental strand, 29109102 - 29109041
Alignment:
Q  518 aaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcat 579  Q
    |||||| |||||||||||||||||||||||  | |||| |||| |||  |||||||||||||    
T  29109102 aaaattaaagtccaacataaaatactccttaattcattcactttctcctatcatcatctcat 29109041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 499 - 597
Target Start/End: Complemental strand, 1498153 - 1498055
Alignment:
Q  499 cacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaactcta 597  Q
    ||||||||||||||  |  |||||||||||||||| |||||||||||||  | |||| |||| ||| ||||||||| |||| |||||||||| ||||||    
T  1498153 cacacttatgattaagctcaaaattgaagtccaacctaaaatactccttaatacattcactttctcccatcatcatttcatctcatcactcacactcta 1498055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 518 - 618
Target Start/End: Original strand, 17770458 - 17770558
Alignment:
Q  518 aaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaactctattttatttacactaaaaaag 617  Q
    |||||| ||| |||||||||||||||||||  | |||| ||||| ||||||| ||||||||| ||| |||||| ||||||| | ||||  ||||||||||    
T  17770458 aaaattaaagcccaacataaaatactccttaattcattcacttcatctcatcctcatctcatctcaccactcacactctatatcatttctactaaaaaag 17770557  T
Q  618 a 618  Q
    |    
T  17770558 a 17770558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 499 - 585
Target Start/End: Original strand, 4919628 - 4919714
Alignment:
Q  499 cacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatc 585  Q
    |||||||||||||||||| ||||||  |   ||||||||||||||||||| |||||| |||| ||| | |||||||||||| |||||    
T  4919628 cacacttatgattagacccaaaattagatcgcaacataaaatactccttgatccattcactttctcccttcatcatctcatctcatc 4919714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 494
Target Start/End: Complemental strand, 32678509 - 32678410
Alignment:
Q  395 ggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccacttttcattttactaatattatccctcctaacccacact 494  Q
    |||||||| ||||| ||||| | |||||| |||| ||||||   ||| |||||||||| ||||   ||||||| |||||||||||||| |||| ||||||    
T  32678509 ggttctcggtttttaattttgagatccaatgaaccgatgaatcgaactgatgctaacctcactccccattttagtaatattatccctcataacacacact 32678410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 666 - 708
Target Start/End: Complemental strand, 16584659 - 16584617
Alignment:
Q  666 ctgagattgaccatctcttggttagttttttcatgtttatgcc 708  Q
    |||||||||  |||||||||||||||||| |||||||||||||    
T  16584659 ctgagattgttcatctcttggttagttttatcatgtttatgcc 16584617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 499 - 614
Target Start/End: Original strand, 33950 - 34065
Alignment:
Q  499 cacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatcactcaaactctat 598  Q
    ||||||||||| ||  || |||||| ||| |||||||||| |||| |||  |||||| |||| ||| |||||||||||||| |||||||| | |||| ||    
T  33950 cacacttatgagtatgcccaaaattaaagcccaacataaagtactacttaatccattcactttctcccatcatcatctcatgtcatcacttagactcgat 34049  T
Q  599 tttatttacactaaaa 614  Q
    || ||||  |||||||    
T  34050 ttcatttctactaaaa 34065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 386 - 614
Target Start/End: Original strand, 13870 - 14088
Alignment:
Q  386 atttggtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccacttttcattttactaatattatccctccta 485  Q
    ||||||||||||| ||| ||||| ||||| | ||||||  ||| ||||||   |||||||||||||| ||||   |||||||||| |||||| |||| |     
T  13870 atttggtttggttatcggtttttcattttgagatccaataaaccgatgaatcgaaccgatgctaacctcactccccattttactattattatacctctt- 13968  T
Q  486 acccacactaacccacacttatgattagacctaaaattgaagtccaacataaaatactccttggtccatttacttcctctcatcatcatctcatatcatc 585  Q
       |||||      |||||||||| ||  || |||||| ||| ||| |||||| |||| |||  |||||| |||| ||  |||||||||||||| |||||    
T  13969 ---cacac------acacttatgagtatgcccaaaattaaagcccagcataaagtactacttaatccattcactttcttccatcatcatctcatctcatc 14059  T
Q  586 actcaaactctattttatttacactaaaa 614  Q
    ||||| |||| |||| ||||  |||||||    
T  14060 actcagactcgatttcatttctactaaaa 14088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 494
Target Start/End: Original strand, 8292 - 8399
Alignment:
Q  387 tttggtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccacttttcattttactaatattatccctcctaa 486  Q
    ||||||| |||||||| ||||  ||||||| ||||||||| | |||||||  ||| | |||||||| ||||   ||||||  |||||||||||||||| |    
T  8292 tttggttcggttctcgattttgtatttttagatccaaagagccgatgaaccgaactggtgctaacctcactccgcattttggtaatattatccctcctca 8391  T
Q  487 cccacact 494  Q
    | ||||||    
T  8392 cacacact 8399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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