View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1313-Insertion-7 (Length: 488)

Name: NF1313-Insertion-7
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1313-Insertion-7
NF1313-Insertion-7
[»] chr1 (4 HSPs)
chr1 (249-488)||(40408789-40409028)
chr1 (12-197)||(40408552-40408737)
chr1 (134-174)||(40408783-40408823)
chr1 (249-283)||(40408680-40408714)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 249 - 488
Target Start/End: Original strand, 40408789 - 40409028
Alignment:
Q  249 gaactctttctaatagtaatctatactaatatataaatgcctgaattagttttccattgatttttgttgtgcatatatgtctaacaaccaacataggcgc 348  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40408789 gaactctttctaatagtaatctataccaatatataaatgcctgaattagttttccattgatttttgttgtgcatatatgtctaacaaccaacataggcgc 40408888  T
Q  349 aaactcaacgataacctctagtacatgcarggagagacatgcgcaaaccctatgtctaagaggggacgtaatcgtaggggtggtttggaagggacttcac 448  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40408889 aaactcaacgataacctctagtacatgcagggagaggcatgcgcaaaccctatgtctaagaggggacgtaatcgtaggggtggtttggaagggacttcac 40408988  T
Q  449 aaacagtgcgtcccatgttttggacccttctcaagaccag 488  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  40408989 aaacagtgcgtcccatgttttggacccttctcaagaccag 40409028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 12 - 197
Target Start/End: Original strand, 40408552 - 40408737
Alignment:
Q  12 aggtgattccatagagttaaaatcatctattagagatgaaaaaggagaaaattcatctctaactctattactactaagtgttttaaagaccacaaatttg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40408552 aggtgattccatagagttaaaatcatctattagagatgaaaaaggagaaaattcatctctaactctattactactaagtgttttaaagaccacaaatttg 40408651  T
Q  112 atgatcannnnnnnncctatcgttatttgaactctttctaatagtaatctataccaatatatagaggcatacatcagtttggatgg 197  Q
    |||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40408652 atgatcattttttttcctatcgttatttgaactctttctaatagtaatctataccaatatatagaggcatacatcagtttggatgg 40408737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 40408783 - 40408823
Alignment:
Q  134 ttatttgaactctttctaatagtaatctataccaatatata 174  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40408783 ttatttgaactctttctaatagtaatctataccaatatata 40408823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 283
Target Start/End: Original strand, 40408680 - 40408714
Alignment:
Q  249 gaactctttctaatagtaatctatactaatatata 283  Q
    |||||||||||||||||||||||||| ||||||||    
T  40408680 gaactctttctaatagtaatctataccaatatata 40408714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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