View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13130_high_6 (Length: 248)

Name: NF13130_high_6
Description: NF13130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13130_high_6
NF13130_high_6
[»] chr1 (2 HSPs)
chr1 (19-248)||(7292480-7292709)
chr1 (19-248)||(7288722-7288951)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 7292480 - 7292709
Alignment:
Q  19 cataccacattcttcatcatgattttggttacacatatggaaatcccccagttcttgctaactacacccctccctctcattgctcatttaaaaaattctc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7292480 cataccacattcttcatcatgattttggttacacatatggaaatcccccagttcttgctaactacacccctccctctcattgctcatttaaaaaattctc 7292579  T
Q  119 caaaattgttcttgaatggaaagcaacatgcgagggaagacaatatgatcgaattttcggtgtttggcttggtggagttgagttactcagaagctgtact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7292580 caaaattgttcttgaatggaaagcaacatgcgagggaagacaatatgatcgaattttcggtgtttggcttggtggagttgagttactcagaagctgtact 7292679  T
Q  219 gcagaaccaatagcaaatgggattgtttgg 248  Q
    ||||||||||||||||||||||||||||||    
T  7292680 gcagaaccaatagcaaatgggattgtttgg 7292709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 7288722 - 7288951
Alignment:
Q  19 cataccacattcttcatcatgattttggttacacatatggaaatcccccagttcttgctaactacacccctccctctcattgctcatttaaaaaattctc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| || || ||||||| || |  |||||||||    
T  7288722 cataccacattcttcatcatgattttggttacacatatggaaacccaccagttcttgctaattacaccccaccttcacattgcttatattcaaaattctc 7288821  T
Q  119 caaaattgttcttgaatggaaagcaacatgcgagggaagacaatatgatcgaattttcggtgtttggcttggtggagttgagttactcagaagctgtact 218  Q
    |||||||||||||||||||||||||||||| || |||||||||| |||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||    
T  7288822 caaaattgttcttgaatggaaagcaacatgtgaaggaagacaatttgatcgaatttttggtgtttggcttgatggtgttgagttactcagaagctgtact 7288921  T
Q  219 gcagaaccaatagcaaatgggattgtttgg 248  Q
    |||||||||| |  ||||||||||||||||    
T  7288922 gcagaaccaagacaaaatgggattgtttgg 7288951  T

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