View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13130_low_1 (Length: 427)
Name: NF13130_low_1
Description: NF13130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13130_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Original strand, 35358308 - 35358696
Alignment:
| Q |
18 |
ttttgcataaaccttttttccatcatt------atggaacttttatatccttagtacaattgagaatttacaaacaaataaagactagacaattatttaa |
111 |
Q |
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| T |
35358308 |
ttttgcataaaccttttttccatcattttagtaatggaacttttatatccttagcacaattgagaatttacaaacaaataaagactagacaattatttaa |
35358407 |
T |
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| Q |
112 |
catgacataatagtgagttttctttttgtgttgataatgaagactagactaggcaattctttagaagggaagcataaaatgtttattattgtattcattg |
211 |
Q |
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| T |
35358408 |
catgacataataatgagttttctttttgtgttgataatgaagactagactaggcaattctttagaagggaagcataaaatgtttattattgtattcattg |
35358507 |
T |
|
| Q |
212 |
atatactgataaaagatgtttacgcatgtgggagaagcctattcaggttgagcataaaattcaagctccttaagttgggctcgccatctctctaatattg |
311 |
Q |
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| T |
35358508 |
atatactgataaaagatgtttacgaatgtgggagaagcctattcaggttgagcacaaaattcaagctccttaagttgggctcgccatctctctaatattg |
35358607 |
T |
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| Q |
312 |
aacatgctgaaagctttcttcaggaatttataagttgggtgtaagaaggtataaattgtaaatattcatacttttatgaaaattattag |
400 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35358608 |
aacaggctgaaagctttcttcaggaatttataatttgggtgtaagaaggtataaattgtaaatattcatacttttatgaaaattattag |
35358696 |
T |
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