View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13130_low_2 (Length: 408)
Name: NF13130_low_2
Description: NF13130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13130_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 392
Target Start/End: Complemental strand, 51008660 - 51008273
Alignment:
| Q |
17 |
atcagtagaatttattctttatattcatacaataagcttaaataacagcaatagttaactgaatcatcatcatcaaaatatttagatcatatgcatacat |
116 |
Q |
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| T |
51008660 |
atcagtagaatttattctttatattcatacaataagcttaaatgacagcaatagttaactgaatcatcatcatcaaaatatttagatcatatgcatacat |
51008561 |
T |
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| Q |
117 |
aaaacagcttata----ccaaaaatattatctaagcaaatcaagtagaaacaaagttgcttataccaatgaatgtcttataagcatgatgcaactaatta |
212 |
Q |
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| T |
51008560 |
aaaacagcttatatataccaaaaatattatctaagcaaatcaagtagaaacaaatttgcttataccaatgaatgtcttataagcatgatgcaactaatta |
51008461 |
T |
|
| Q |
213 |
tcacaagaatattatcttgtttatatgcatatatattggaggctgttactatggtaggtgaagtgtagagggtgaatnnnnnnnnnnnnnnnnnnnnnnn |
312 |
Q |
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| T |
51008460 |
tcacaagaatattatcttgtttatatgcatatatattggaggctgttactatggtaggtgaagtgtagagggtgaatgagagagagagagagagagataa |
51008361 |
T |
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| Q |
313 |
ntaaataataattttgatttaattgattaatg--------tgttaggaaagaaaggaggcagaaaaatgaagatattataagattagt |
392 |
Q |
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| T |
51008360 |
ataaataataattttgatttatttaattaatgtgttagtttgttaggaaagaaaggaggcagaaaaatgaagatattataagattagt |
51008273 |
T |
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