View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13130_low_4 (Length: 367)
Name: NF13130_low_4
Description: NF13130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13130_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 358
Target Start/End: Original strand, 26453820 - 26454147
Alignment:
| Q |
16 |
caaactagattgcttgagttctagttattcaaccattatattgggtaattaattatttatgcagagtaatgtcattatgattgagtatttgttcatttaa |
115 |
Q |
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| T |
26453820 |
caaactagattgcttgagttctagttattcaaccattatattgggtaattaattatttatgcagagtaatgtcattatgattgagtatttgttcatttaa |
26453919 |
T |
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| Q |
116 |
actactatgcatcaagtaccagtatacattatctaatttatttaacgaaaatgttttagtttggttttaccaagtacataaacaaacacataaaagaaca |
215 |
Q |
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| T |
26453920 |
actactatgcatcaagtaccagtatacattatctaatttatttaacgaaaatgttttagtttggttttacaaagtacagaaacaaacacataaaagaaca |
26454019 |
T |
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| Q |
216 |
ccgacacacgtcattgacgataataatttaaaaagatgaattaattgaatatagtcacacatatctgtgttgaatattgatacgtgtcaaacatcggaca |
315 |
Q |
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| T |
26454020 |
ctg--acacgtcattgacgataataatttaaaaagatgaattaattgaatatagtcacac-------------gtattgatacgtgtcaaacatcggaca |
26454104 |
T |
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| Q |
316 |
cgttttcaatcaagaaatatcagctatgtagaggattcctttg |
358 |
Q |
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| T |
26454105 |
cgttttcaatcaggaaatatcagctatgtagaggattcctttg |
26454147 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 12994803 - 12994842
Alignment:
| Q |
235 |
ataataatttaaaaagatgaattaattgaatatagtcaca |
274 |
Q |
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| T |
12994803 |
ataataattttgaaagatgaattaattgaatatagtcaca |
12994842 |
T |
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