View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13130_low_5 (Length: 343)
Name: NF13130_low_5
Description: NF13130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13130_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 15 - 305
Target Start/End: Complemental strand, 43920991 - 43920706
Alignment:
| Q |
15 |
catttctatggtaggtggtcgttgtcaaacttttcctttgctctcgcattcaaaatttgacaattattgttctggtgttgttcattatggtgcaaactgt |
114 |
Q |
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| T |
43920991 |
catttctatggtaggtggtcgctgtcaaactttacctttgctctcgcattcaaaatttgacaattattgttctggtgttgttcattatggtgcaaactgt |
43920892 |
T |
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| Q |
115 |
taggatatagaatataataaaggggaattagagtagtaagagtcgttagtgaaataacagctgtattcatatagtaaaggggaattagagtatagcaaga |
214 |
Q |
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| T |
43920891 |
taggatatagaatataataaaggggaattagagtagtaagagtcgttagtgaaataacagctgtattcatatagtaaaggggaattagagtatagcaa-- |
43920794 |
T |
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| Q |
215 |
tttgttagagtaggaaggcattcagatttgtgaaagtttggtgaatagagcagtggctatgcaggctatgttgtagaagagaaaacccctg |
305 |
Q |
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| T |
43920793 |
---gttagagtaggaaggcattcagatttgtgaaagtttggtgaatagagcagtggctatgtaggctatgttgtagaagggaaaacccctg |
43920706 |
T |
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