View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13131_high_2 (Length: 519)
Name: NF13131_high_2
Description: NF13131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13131_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Original strand, 10441150 - 10441651
Alignment:
| Q |
1 |
aagagaggtacccttttggtgtcaagcttggaagttctacaaaagataggaagagataaagcagaagcagtagctatggcattcatggctatgaaagtga |
100 |
Q |
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| T |
10441150 |
aagagaggtacccttttggtgtcaagcttggaagttctacaaaagataggaagagataaagcagaagcagtagctatggcattcatggctatgaaagtga |
10441249 |
T |
|
| Q |
101 |
tgagaagaaggaaagagaaacgnnnnnnnncataaacaagtttgtttgatatatttgatgattttctgttgataagaggttggtgttcctcgcgatctcg |
200 |
Q |
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| T |
10441250 |
tgagaagaaggaaagagaaacgaaaaaaaacataaacaagtttgtttgatatatttgatgattttttgttgataagaggttggtgttcctcgcgatctcg |
10441349 |
T |
|
| Q |
201 |
gtttgcctaatacataatgacacgtggaagaatgtggaaactgttggtttacacgtggcacttgttacttccacatgattgttgaaaatgtgggacctat |
300 |
Q |
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| T |
10441350 |
gtttgcctaatacataatgacacgtggaagaatgtggaaactgttggtttacacgtggcacttgttacttccacatgattgttgaaaatgtgggacctat |
10441449 |
T |
|
| Q |
301 |
tatgttgccagctaggattgggatgatatcttctctatcttctttgagttgtgtctcttgtcgttttttgatttcattagagaaaatgaagtgggcatta |
400 |
Q |
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| T |
10441450 |
tatgttgccaactaggattgggatgatatcttctctatcttctttgagttgtgtctcttgtcgttttttgatttcattagagaaaatgaagtgggcatta |
10441549 |
T |
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| Q |
401 |
attggttattggttgttctgatttttgtgtttgtgaaatcaaaatagtaagtcattttgatcatgatattaggaatcaaattggatactatcagaatttg |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||| |||||||| |
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| T |
10441550 |
attggttattggttgttctgatttttgtgtttgtgaaatcaaaatagtaagtcattttgatcatgat-ttaggaatcaaagtagatactattagaatttg |
10441648 |
T |
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| Q |
501 |
att |
503 |
Q |
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| T |
10441649 |
att |
10441651 |
T |
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