View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13131_low_1 (Length: 709)
Name: NF13131_low_1
Description: NF13131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13131_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 167 - 693
Target Start/End: Original strand, 40241025 - 40241551
Alignment:
| Q |
167 |
gcacgttatagaacactggtggaacgaatgataattgaacacgtaagtgtgttgtgttttgaaacaaaacatcaaaacgacatcgtacaacatgtgtgtt |
266 |
Q |
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| T |
40241025 |
gcacgttatagaacactggtggaacgaatgataattgaacacgtaagagtgttgtgttttgaaacaaaacatcaaaacgacatcgtagaacttgtgtgtt |
40241124 |
T |
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| Q |
267 |
aaagaaacataaacataataacatcgtcatcgtagatataaatatttattattagttgctgttcaacttcagttttcattttatcttcttcttcttcttt |
366 |
Q |
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| T |
40241125 |
aaagaaacataaacataataacatcgtcatcgtagatataaatatttattattagttgctgttcaacttcagttttcattttatcttcttctt------t |
40241218 |
T |
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| Q |
367 |
cctccctctctcgccccctttgaaaccaaacctagacaccattttccctttactttctttcttccaatttctt------cgaattttcgttgaattcatc |
460 |
Q |
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| T |
40241219 |
cctccctctctcgccccctttgaaaccaaacctagacaccattttccctttactttctttcttccaatttcttttccttcgaattttcgttgaattcatc |
40241318 |
T |
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| Q |
461 |
actattggatattcccttcagtcaagaagcttctggtgagtttctctttccttttccttatattttatcgtatttaatttttaatttcattgtttctgtg |
560 |
Q |
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| T |
40241319 |
actattggatattcccttcagtcaagaagcttctggtgagtttctctttccttttccttttattttatcgtatttaatttttaatttcattgtttctgtg |
40241418 |
T |
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| Q |
561 |
tacgctacttcaattaggttttggaacttgcttctgtaacactagttttttgcttcaatgtttttatgttttatcattaagtttatttcaattgtaaaat |
660 |
Q |
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| T |
40241419 |
tacgctacttcaattaggttttggaacttgcttctgtatcactaggtttttgcttcaatgtttttatgttttatcattaagtttatttcaattgtaaaat |
40241518 |
T |
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| Q |
661 |
caacacgctgatttctatgtctttatattgtta |
693 |
Q |
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| T |
40241519 |
caacacgctgatttctatgtctttatattgtta |
40241551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 40240846 - 40240933
Alignment:
| Q |
16 |
atcggtttgcacaagcagatacatata-------cagatatcgatctaggtaggtgtttgtattaatccaggatgcaggtttggtaca |
96 |
Q |
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| T |
40240846 |
atcggtttgcacaagcagatacatatacattatacagatatcgatctaggtaggtgtttgtattaatccaggatgcaggtttggtaca |
40240933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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