View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13131_low_3 (Length: 510)
Name: NF13131_low_3
Description: NF13131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13131_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 472
Target Start/End: Complemental strand, 34759860 - 34759406
Alignment:
| Q |
18 |
acatggaccattcttcgaacaagataagnnnnnnntgctttgcagactttgtcgatagggtacttcttgatctgaatagtgcgcaaatcggaagtttttc |
117 |
Q |
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|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
34759860 |
acatggaccattcttcgaacaagataagaaaaaaatgctttgtagactttgtcgatagggtacttattgatctgaatagtgcgcagatcggaagtttttc |
34759761 |
T |
|
| Q |
118 |
tctttcaatgttagagaaatataattcttcttatattgaaaagtggatatctttggttataaatctgagagtcaaaaatctttgcgtctatttgcaggaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34759760 |
tctttcaatgttagagaaatataattcttcttatattgaaaagtggatatctttggttataaatctgagagtcaaaaatctttgcgtctatttgcaggaa |
34759661 |
T |
|
| Q |
218 |
aaaatatttgcgtcctttgatgccctttttaaatgccagtccttagaggaattggttctgaatgggtgtgccttcagacttcctagctttgtttgtcttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
34759660 |
aaaatatttgcgtcctttgatgccctttttaaatgccagtccttagcggaattggttctgaatggatgtgccttcagacttcctagcattgtttgtcttt |
34759561 |
T |
|
| Q |
318 |
catcccttacaatcctgaagttgtttaaaatcaatattttttgtgactattctaaaaagtccaaaactttggcacttaatttcgcagctcttaaacagta |
417 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||| |||||||||||||| | |||||||||||||||||||||| ||||||||| ||| || |
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| T |
34759560 |
catcccttacaatcctgaagttgtctagaatcaatattttttgcgactattctaaaaaattcaaaactttggcacttaatttcccagctcttagacatta |
34759461 |
T |
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| Q |
418 |
tgagacattagattgcactttttcacatgtgaaaagcgtcactttacaagtgcct |
472 |
Q |
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| T |
34759460 |
tgagacattagattgcactttttcacatgtgaagagtgtcaatttacaagtgcct |
34759406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 233 - 492
Target Start/End: Complemental strand, 34751818 - 34751559
Alignment:
| Q |
233 |
tttgatgccctttttaaatgccagtccttagaggaattggttctgaatgggtgtgccttcagacttcctagctttgtttgtctttcatcccttacaatcc |
332 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34751818 |
tttgatgcccttttcaaatgccagtccttagaggaattggtgctgaatggatgtgccttcacacttcctagctttgtttgtctttcatcccttacaatcc |
34751719 |
T |
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| Q |
333 |
tgaagttgtttaaaatcaatattttttgtgactattctaaaaagtccaaaactttggcacttaatttcgcagctcttaaacagtatgagacattagattg |
432 |
Q |
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||||||||| || ||||| ||| |||||||| |||||| |||||||||| ||||| ||||||||| ||||||||| | ||||||||||||||||||| |
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| T |
34751718 |
tgaagttgtctagaatcacaattacttgtgactcttctaatgagtccaaaacgttggcgcttaatttcccagctcttagaaagtatgagacattagattg |
34751619 |
T |
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| Q |
433 |
cactttttcacatgtgaaaagcgtcactttacaagtgcctttgcttgaactagtttcaat |
492 |
Q |
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| T |
34751618 |
cacttttctgaatgtgaagagtgtcactttacaagtgcctctccttgaagttgtttcaat |
34751559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 237 - 437
Target Start/End: Complemental strand, 34742637 - 34742437
Alignment:
| Q |
237 |
atgccctttttaaatgccagtccttagaggaattggttctgaatgggtgtgccttcagacttcctagctttgtttgtctttcatcccttacaatcctgaa |
336 |
Q |
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||||||||||||||||| |||| |||||||||||| | |||||||| |||||| || |||||||||||| |||||| |||||||||||||||||||||| |
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| T |
34742637 |
atgccctttttaaatgcaagtctttagaggaattgatgctgaatggatgtgccgtctcacttcctagcttagtttgtttttcatcccttacaatcctgaa |
34742538 |
T |
|
| Q |
337 |
gttgtttaaaatcaatattttttgtgactattctaaaaagtccaaaactttggcacttaatttcgcagctcttaaacagtatgagacattagattgcact |
436 |
Q |
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| T |
34742537 |
gttgtctagaatcacaattacttgtgactcttctaataagtccaaaactttggcacttaatttcccagcaattagaaagtatgagacattggattgcact |
34742438 |
T |
|
| Q |
437 |
t |
437 |
Q |
| |
|
| |
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|
| T |
34742437 |
t |
34742437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 53 - 492
Target Start/End: Complemental strand, 34747388 - 34746949
Alignment:
| Q |
53 |
tgctttgcagactttgtcgatagggtacttcttgatctgaatagtgcgcaaatcggaagtttttctctttcaatgttagagaaatataattcttcttata |
152 |
Q |
| |
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||||||| ||||||||| ||||||||||| ||| |||||||||| || ||| |||||||||||||| ||||| ||||| ||| | ||||| |||| |
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| T |
34747388 |
tgctttgtagactttgtagatagggtactgcttcgactgaatagtgaacacatccgaagtttttctcttaaaatgtccgagaagtatgactcttcctata |
34747289 |
T |
|
| Q |
153 |
ttgaaaagtggatatctttggttataaatctgagagtcaaaaatctttgcgtctatttgcaggaaaaaatatttgcgtcctttgatgccctttttaaatg |
252 |
Q |
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|| | ||||||||||| | ||||||||||||||||||| ||| ||| ||||||||||||| | | | | || | |||| ||||||| ||||| |
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| T |
34747288 |
ttaacaagtggatatccatcgttataaatctgagagtcagaaagcttcgcgtctatttgcaaaatgacctcgcagtttcgtctgatccccttttaaaatg |
34747189 |
T |
|
| Q |
253 |
ccagtccttagaggaattggttctgaatgggtgtgccttcagacttcctagctttgtttgtctttcatcccttacaatcctgaagttgtttaaaatcaat |
352 |
Q |
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|||||| |||||||||||||| |||| | |||||||| ||| |||| ||| |||||||||||||||||||||| || ||||||| |||| | |||| |
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| T |
34747188 |
ccagtctttagaggaattggtgctgagtcggtgtgccatcacactttctacctttgtttgtctttcatcccttgcagtcctgaacttgtattgcatcata |
34747089 |
T |
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| Q |
353 |
attttttgtgactattctaaaaagtccaaaactttggcacttaatttcgcagctcttaaacagtatgagacattagattgcactttttcacatgtgaaaa |
452 |
Q |
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||| ||| || |||||| | |||||||| ||| ||||||||||| ||| ||||| | ||| || |||||| | ||||| ||| ||| |||||| | |
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| T |
34747088 |
attagttgcagctcttctaatgactccaaaacgttgacacttaatttcccagttcttagaaagtttgtgacatttggttgcattttgtcaggtgtgaaga |
34746989 |
T |
|
| Q |
453 |
gcgtcactttacaagtgcctttgcttgaactagtttcaat |
492 |
Q |
| |
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| |||| ||||||||| ||| |||||||| |||||||||| |
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| T |
34746988 |
gtgtcattttacaagtacctctgcttgaagtagtttcaat |
34746949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 34752021 - 34751942
Alignment:
| Q |
54 |
gctttgcagactttgtcgatagggtacttcttgatctgaatagtgcgcaaatcggaagtttttctctttcaatgttagag |
133 |
Q |
| |
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|||||| ||||||||| ||||||||||| ||| ||||||||||||| || ||| ||||||||||||| ||||| |||| |
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| T |
34752021 |
gctttgtagactttgttgatagggtactgcttcatctgaatagtgcacacatccaaagtttttctcttaaaatgtcagag |
34751942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 34751902 - 34751849
Alignment:
| Q |
158 |
aagtggatatctttggttataaatctgagagtcaaaaatctttgcgtctatttg |
211 |
Q |
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|||||||||||| ||||| ||||||||||||||| ||||||||| |||||||| |
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| T |
34751902 |
aagtggatatctgtggttgtaaatctgagagtcagaaatctttgtatctatttg |
34751849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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