View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13131_low_6 (Length: 329)
Name: NF13131_low_6
Description: NF13131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13131_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 28 - 312
Target Start/End: Original strand, 54218942 - 54219224
Alignment:
| Q |
28 |
aaaaaaggaaattcagtgaaatttgaagacgcaacttcccaggcctaaagattgcacgtggttcctcacatcagtcagcttcttcaaatttgatgataaa |
127 |
Q |
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| T |
54218942 |
aaaaaaggaaattcagtgaaatttgaagacgcaacttcccaggcctaaagattgcacgtggttcctcacatcagtcagcttcttcaaatttgatgataaa |
54219041 |
T |
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| Q |
128 |
cctccggaacaaaatatgttgatctcctctagaactgtgtgccattttctgtcaaacactttaccaattggatttcaatttcatctccatcaaaatctga |
227 |
Q |
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| T |
54219042 |
cctccggaacaaaatatgttgatcgcctctagaactgtgg--cattttctgtcaaacactttaacaattggatttcaatttcatctccatcaaaatctga |
54219139 |
T |
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| Q |
228 |
aaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatgtcaagtcttcattatccaaggctgtgcaatct |
312 |
Q |
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| T |
54219140 |
aaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatgtcaagtcttcattatccaaggctgtgcaatct |
54219224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 59 - 301
Target Start/End: Original strand, 31217373 - 31217613
Alignment:
| Q |
59 |
caacttcccaggcctaaagattgcacgtggttcctcacatcagtcagcttcttcaaatttgatgataaacctccggaacaaaatatgttgatctcctcta |
158 |
Q |
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| T |
31217373 |
caacttcccatgcctaaagcttgcaattggttcctcacatcagccagcttcttcgatttttttgatagatatccagtacagtaaatgttcatctccctta |
31217472 |
T |
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| Q |
159 |
g-aactgtgtgccattttctgtcaaacactttaccaattggatttcaatttcatctccatcaaaatctgaaaaagaacataatttgagagaagatttgat |
257 |
Q |
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| T |
31217473 |
ataac---gtgacattttctaacaaaaacttcaccaatctgatttcggcttcatctccacgaaaatctgaaatatcacatgatttgagagaagatttgaa |
31217569 |
T |
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| Q |
258 |
acagcaaggcaaagaatctgatgtcaagtcttcattatccaagg |
301 |
Q |
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| T |
31217570 |
acagcaaggcagtgaatctgatgtccagtcttcactatccaagg |
31217613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 17595368 - 17595307
Alignment:
| Q |
219 |
aaaatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatg |
280 |
Q |
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| T |
17595368 |
aaaatctgaaatagaacatactttgagagaagatgtgaaacaccaaggaaatgaatttgatg |
17595307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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