View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13132_high_11 (Length: 268)
Name: NF13132_high_11
Description: NF13132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13132_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 26 - 243
Target Start/End: Original strand, 29232558 - 29232775
Alignment:
| Q |
26 |
tggattctggctccataatcatctatctcctccttgtttcttttgtttctcctatttactctttcaaaacaagtagccatcaattagagaatcaaacttt |
125 |
Q |
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| T |
29232558 |
tggattctggctccataatcatctatctcctccttgtttcttttgtttctcctatttactctttcaaaacaagtagctatcaattagagaatcaaacttt |
29232657 |
T |
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| Q |
126 |
tcaaatagagaagtttcacaagttgaaaaagaccataaaaaaccgtcttcaacagattaacaagcctcctattaagacaatccaggtattttgaaataaa |
225 |
Q |
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| T |
29232658 |
tcaaatagagaagtttcacaagttgaaaaagaccataaaaaaccgtcttcaacagattaacaagcctcctattaagacaattcaggtattttgaaataaa |
29232757 |
T |
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| Q |
226 |
tctcaaaagttttgtagt |
243 |
Q |
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| T |
29232758 |
tctcaaaacttttgtagt |
29232775 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 30910682 - 30910623
Alignment:
| Q |
169 |
cgtcttcaacagattaacaagcctcctattaagacaatccaggtattttgaaataaatct |
228 |
Q |
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|||||||||||||| ||||||||| || |||||||||| || |||| || |||||||||| |
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| T |
30910682 |
cgtcttcaacagatcaacaagcctgctgttaagacaattcaagtatgttaaaataaatct |
30910623 |
T |
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