View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13132_high_16 (Length: 239)
Name: NF13132_high_16
Description: NF13132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13132_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 112 - 225
Target Start/End: Complemental strand, 11470200 - 11470087
Alignment:
| Q |
112 |
tttattccttaaatttactagcttcaattgaatctcaaaagtcaaaacttaggggcatatgttgacgacgagacagtgtatttcttaacatattttctta |
211 |
Q |
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| T |
11470200 |
tttattccttaaatttactagcttcaatagaatctcaaaagtcaaaacttaggggcatatgttgacaacgagacaatgtatttcttaacatattttctta |
11470101 |
T |
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| Q |
212 |
attacacatcatta |
225 |
Q |
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| T |
11470100 |
attacacatcatta |
11470087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 11470335 - 11470246
Alignment:
| Q |
15 |
atgaagtaccttctgagtgccaggattggaagaagtaacactagaagaatcaacagaaatgggagaattaacgctacccattgttagaac |
104 |
Q |
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| T |
11470335 |
atgaagtaccttctgagtgccaggattggaagaagtaacactagaagaatcaacagaaatgggagaattaacgctgcccattgttagaac |
11470246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 48852743 - 48852699
Alignment:
| Q |
188 |
tgtatttcttaacatattttcttaattacacatcattattttctt |
232 |
Q |
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| T |
48852743 |
tgtatttgttaacattttttcttaattatacatcattatcttctt |
48852699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 44601106 - 44601062
Alignment:
| Q |
182 |
agacagtgtatttcttaacatattttcttaattacacatcattat |
226 |
Q |
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| T |
44601106 |
agacagtgtatttgctaacacattttcttaattacacatcattat |
44601062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 2672009 - 2671965
Alignment:
| Q |
182 |
agacagtgtatttcttaacatattttcttaattacacatcattat |
226 |
Q |
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||||||||||||| ||||||| ||| ||||||||||||||||||| |
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| T |
2672009 |
agacagtgtatttgttaacatctttccttaattacacatcattat |
2671965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 1713980 - 1714013
Alignment:
| Q |
182 |
agacagtgtatttcttaacatattttcttaatta |
215 |
Q |
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| T |
1713980 |
agacagtgtatttattaacatattttcttaatta |
1714013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 25124476 - 25124432
Alignment:
| Q |
182 |
agacagtgtatttcttaacatattttcttaattacacatcattat |
226 |
Q |
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||||||||||||| |||| | ||||||||||||||||||||||| |
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| T |
25124476 |
agacagtgtatttgttaataccttttcttaattacacatcattat |
25124432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 31125407 - 31125367
Alignment:
| Q |
186 |
agtgtatttcttaacatattttcttaattacacatcattat |
226 |
Q |
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| T |
31125407 |
agtgtatttattaacacattttcttaattacatatcattat |
31125367 |
T |
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