View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13132_high_17 (Length: 238)
Name: NF13132_high_17
Description: NF13132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13132_high_17 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 6165938 - 6165794
Alignment:
| Q |
34 |
ataaaaaattgaaagttatgccactttgttatcagtgaaatttggtgttttccaatcatagttgaaccgtgatttaatcaaatttcttttggctgttatt |
133 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| ||||||||||| |
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| T |
6165938 |
ataaaaaattgaaagtcatgccactttgttatcagtgaaatttggtgttttctaatcatagttggacaatgatttaatcaaatttcttgtggctgttatt |
6165839 |
T |
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| Q |
134 |
attcagcaccggcatattaaaaataaaatatacttgacgttttgg |
178 |
Q |
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| T |
6165838 |
attcagcactggcatattaaaaataaaatatacttgtcgttttgg |
6165794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 34 - 166
Target Start/End: Complemental strand, 6235133 - 6235001
Alignment:
| Q |
34 |
ataaaaaattgaaagttatgccactttgttatcagtgaaatttggtgttttccaatcatagttgaaccgtgatttaatcaaatttcttttggctgttatt |
133 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
6235133 |
ataaaaaattgaaagttttgccactttgttatcagtgaaatttggtattttctaatcatagttgaaccatgatttaatcaaatttctcgtggctgttatt |
6235034 |
T |
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| Q |
134 |
attcagcaccggcatattaaaaataaaatatac |
166 |
Q |
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| T |
6235033 |
attcagcaccggcatattaaaaataaaatatac |
6235001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 49 - 136
Target Start/End: Complemental strand, 6242282 - 6242195
Alignment:
| Q |
49 |
ttatgccactttgttatcagtgaaatttggtgttttccaatcatagttgaaccgtgatttaatcaaatttcttttggctgttattatt |
136 |
Q |
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| T |
6242282 |
ttatgccactttgttatcagtgaaatttggtgttttttaatcatagttgaaccatgatttaatcaaatttcttgtggctgttattatt |
6242195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 6255899 - 6255817
Alignment:
| Q |
103 |
tgatttaatcaaatttcttttggctgttattattcagcaccggcatattaaaaataaaatatacttgacgttttggttctctc |
185 |
Q |
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| T |
6255899 |
tgatttaatcaaatttcttgtggctgttattattctgcaccggcatattaaaaataaaatatacttgtcgttttggctctctc |
6255817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 117
Target Start/End: Complemental strand, 6879624 - 6879541
Alignment:
| Q |
34 |
ataaaaaattgaaagttatgccactttgttatcagtgaaatttggtgttttccaatcatagttgaaccgtgatttaatcaaatt |
117 |
Q |
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| T |
6879624 |
ataaaaaattgaatgtcatggcactttgttatcagtgaaatttggtgttttctaatcatagtcggaccatgttttaagcaaatt |
6879541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 6256249 - 6256186
Alignment:
| Q |
36 |
aaaaaattgaaagttatgccactttgttatcagtgaaatttggtgttttccaatcatagttgaac |
100 |
Q |
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| T |
6256249 |
aaaaaattgaaagttatgtcactttgttaccagtgaaatttggt-ttttctaatcatagttgaac |
6256186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 6139091 - 6139053
Alignment:
| Q |
184 |
tctatggcttaataattaaacaactcaagatatatgcat |
222 |
Q |
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| T |
6139091 |
tctatggcctaataatgaaacaactcaagatatatgcat |
6139053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 13283009 - 13283047
Alignment:
| Q |
184 |
tctatggcttaataattaaacaactcaagatatatgcat |
222 |
Q |
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| T |
13283009 |
tctatggcctaataataaaacaactcaagatatatgcat |
13283047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 6165990 - 6165961
Alignment:
| Q |
1 |
ttcagttttactttttattgttagaaagaa |
30 |
Q |
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| T |
6165990 |
ttcagttttactttttattgttagaaagaa |
6165961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 6256304 - 6256275
Alignment:
| Q |
1 |
ttcagttttactttttattgttagaaagaa |
30 |
Q |
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| T |
6256304 |
ttcagttttactttttattgttagaaagaa |
6256275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 169
Target Start/End: Original strand, 14416 - 14553
Alignment:
| Q |
34 |
ataaaaaattgaaagttatgccactttgttatca--gtgaaatttggtgttttccaatcatagttgaaccgtgatttaatcaaatttcttttggctgtta |
131 |
Q |
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||||||||||||| || |||||||||||| ||| |||||||||||||||||| ||| ||| ||| | | |||| |||||||||| | | || ||| || |
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| T |
14416 |
ataaaaaattgaaggtcgtgccactttgttgtcaaagtgaaatttggtgttttctaatgatacttgtatcatgatctaatcaaattccatgtgactgata |
14515 |
T |
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| Q |
132 |
ttattcagcaccggcatattaaaaataaaatatacttg |
169 |
Q |
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| T |
14516 |
atattcttcaccgtcatattaaaaagtaaatatacttg |
14553 |
T |
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