View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13132_low_1 (Length: 615)
Name: NF13132_low_1
Description: NF13132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13132_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 265 - 615
Target Start/End: Complemental strand, 30810818 - 30810470
Alignment:
| Q |
265 |
tatatagtgcctgtttggtttggcgtttgccactcccaaaccaacgttttcacctccaaaagggagtttggctatttctaggatgtctggacaaattcaa |
364 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
30810818 |
tataaagtgcctgtttggtttcgcgtttgccactcccaaacccacattttcacctccaaaagcaagtttggctatttctaggatgtttggacaaattcaa |
30810719 |
T |
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| Q |
365 |
aagtaagtcttcaggttgtacggaaagtgcccaaacgcgggttgcttagaagctacaaatctgagcttctgcggcaatcaaaacgggagtacaagattta |
464 |
Q |
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| T |
30810718 |
aagtaagtctccaggttgcactgaaagtgccgaaacgcgggttgcttagaagctacaaatctgagcttttgtggcaatcaaaacgggagtacaagattta |
30810619 |
T |
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| Q |
465 |
acttttcagtgactagtttatttaccaaactgcccataccttcttctccaattacttcaaatagaacacgacaatnnnnnnncatcacccacttgttttt |
564 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||| |||||||||||| ||||| |
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| T |
30810618 |
acttttcagtgactagtttatttaccaaactg-ccataccttcttctccaattacttctaacagaacacgacaat-aaaaaacatcacccacttattttt |
30810521 |
T |
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| Q |
565 |
cccctctgaaaatcaattcgcagccacgcaacacagatctatgcaatcgtc |
615 |
Q |
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| T |
30810520 |
tccctcagaaattcaattcgcagccacgcaacacatatctatgaaatcgtc |
30810470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 218; Significance: 1e-119; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 7647970 - 7647700
Alignment:
| Q |
1 |
aaataattgtcacatattataacttttatctgcacttatgttatctaatttcaattgtatcaattagataataatttagannnnnnnaaattaatcaaga |
100 |
Q |
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| T |
7647970 |
aaataattgtcacatattataacttttatctgcacttatgttatctaatttcaattgtatcaattagataataatttagatttttttaaattaatcaaga |
7647871 |
T |
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| Q |
101 |
tattttgcaaacgcttaacataacaaggatatttataacaaattcgtgaaataacaaaagtatctgtattagtggatatctactgctaaacttcatatgc |
200 |
Q |
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| T |
7647870 |
tattttgcaaacgcttaacataacaaggatatttataacaaattcgtgaaataacaagagtatttgtattagtggatatctactgctaaacttcatatgc |
7647771 |
T |
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| Q |
201 |
agcgcaaatggaactggtatg-aagggggagacattatggtaaagaaaaatatgatttggacatctatata |
270 |
Q |
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| T |
7647770 |
agcgcaaatggaactggtatgaaaggggaagacattgtagtaaagaaaaatgtgatttggacatctatata |
7647700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 299 - 516
Target Start/End: Complemental strand, 39988801 - 39988585
Alignment:
| Q |
299 |
cccaaaccaacgttttcacctccaaaagggagtttggctatttctaggatgtctggacaaattcaaaagtaagtcttcaggttgtacggaaagtgcccaa |
398 |
Q |
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| T |
39988801 |
cccaaacccacgttttcatctccaaacgcgagttcggcggttcctataatgtttggataaattcaaacgtgattctgtagattgtacggcaagtgctcaa |
39988702 |
T |
|
| Q |
399 |
acgcgggttgcttagaagctacaaatctgagcttctgcggcaatcaaaacgggagtacaagatttaacttttcagtgactagtttatttaccaaactgcc |
498 |
Q |
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| T |
39988701 |
actcggtttggtttgaagctacaaatctgagcttctgcggcaatcaaaa-gtgagttcaagattcaacttttcaatggctagtttatttaccaaattacc |
39988603 |
T |
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| Q |
499 |
cataccttcttctccaat |
516 |
Q |
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| T |
39988602 |
cataccatcttctccaat |
39988585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 299 - 516
Target Start/End: Complemental strand, 8049880 - 8049664
Alignment:
| Q |
299 |
cccaaaccaacgttttcacctccaaaagggagtttggctatttctaggatgtctggacaaattcaaaagtaagtcttcaggttgtacggaaagtgcccaa |
398 |
Q |
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|||||||| |||||||| ||||||| | ||||| ||| || ||| |||| |||| ||||||||| || | ||| || |||||||| |||||| ||| |
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| T |
8049880 |
cccaaacccacgttttcttctccaaacgcgagttcggcggttcctataatgtttggataaattcaaacgtgattctgtagattgtacggcaagtgctcaa |
8049781 |
T |
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| Q |
399 |
acgcgggttgcttagaagctacaaatctgagcttctgcggcaatcaaaacgggagtacaagatttaacttttcagtgactagtttatttaccaaactgcc |
498 |
Q |
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| T |
8049780 |
actcggtttggtttgaagctacaattctgagcttctgcggcaatcaaaa-gtgagttcaagattcaacttttcagtggctagtttatttaacaaattacc |
8049682 |
T |
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| Q |
499 |
cataccttcttctccaat |
516 |
Q |
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| T |
8049681 |
cataccttcttctccaat |
8049664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 380 - 516
Target Start/End: Complemental strand, 7386647 - 7386512
Alignment:
| Q |
380 |
ttgtacggaaagtgcccaaacgcgggttgcttagaagctacaaatctgagcttctgcggcaatcaaaacgggagtacaagatttaacttttcagtgacta |
479 |
Q |
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||||||| |||||| ||||||||| ||| || ||||||||||||||||||||||||||||||||||| | || | ||||||| ||||||||| |||||| |
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| T |
7386647 |
ttgtacgataagtgctcaaacgcggtttggtttgaagctacaaatctgagcttctgcggcaatcaaaa-gtgaattcaagattcaacttttcaatgacta |
7386549 |
T |
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| Q |
480 |
gtttatttaccaaactgcccataccttcttctccaat |
516 |
Q |
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| T |
7386548 |
gtttatttaccaaattacccataccttcttctccaat |
7386512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 5921227 - 5921167
Alignment:
| Q |
380 |
ttgtacggaaagtgcccaaacgcgggttgcttagaagctacaaatctgagcttctgcggca |
440 |
Q |
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| T |
5921227 |
ttgtacggcaagtgctcaaacgcggtttgggatgacgctacaaatctgagcttctgcggca |
5921167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 380 - 440
Target Start/End: Original strand, 36307277 - 36307337
Alignment:
| Q |
380 |
ttgtacggaaagtgcccaaacgcgggttgcttagaagctacaaatctgagcttctgcggca |
440 |
Q |
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|||||||| |||||| ||||||||| ||| || ||||||||||||||||||||||||| |
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| T |
36307277 |
ttgtacggcaagtgctcaaacgcggtttgggatgacgctacaaatctgagcttctgcggca |
36307337 |
T |
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