View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13132_low_10 (Length: 325)
Name: NF13132_low_10
Description: NF13132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13132_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 2 - 308
Target Start/End: Original strand, 48714300 - 48714606
Alignment:
| Q |
2 |
tgaggaggtcatggtttcatatattgaatgcatctacacatgtttaacagcctttgtcttcacatgcttaatttgtcttgtaggatataaagccccaatt |
101 |
Q |
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| T |
48714300 |
tgaggaggtcatggtttcatatattgaatgcatctacacatgtttaacagtttttgtcttcacatgcttaatttgttttgtaggatataaagccccaatt |
48714399 |
T |
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| Q |
102 |
ttaaggtatgatgatgattacaaattctcacgtttttcaatatgaaatgctgatattaagcgctccctctagtcttgaatataagcaaaagtaaataatg |
201 |
Q |
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| T |
48714400 |
ttaaggtatgatgataattatcaattctcacgtttttcaatatgaaatgttgatactaagcgcttcctttggtcttgaatataagcaaaagtaaataatg |
48714499 |
T |
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| Q |
202 |
aacttcgtcaaaattaaatttgaagtaaatagattttgactttttggcctgtctaccttttttcacttgtaaaagaatcggttgtttcattccttatggt |
301 |
Q |
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| T |
48714500 |
aacttcgtcaaaattaaatttgaagtaaatagattttgactttttggcctgtctaccttttttcacttgtaaaagaatcggttgtttcattccttctggt |
48714599 |
T |
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| Q |
302 |
ttacatt |
308 |
Q |
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||||||| |
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| T |
48714600 |
ttacatt |
48714606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 59 - 193
Target Start/End: Original strand, 47165691 - 47165824
Alignment:
| Q |
59 |
cttcacatgcttaatttgtcttgtaggatataaagccccaattttaaggtatgatgatgattacaaattctcacgtttttcaatatgaaatgctgatatt |
158 |
Q |
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| T |
47165691 |
cttcacttgcttaatttgttttgtaggatataaagccccaattttaaggtatgatgatgattaccaattctcacg-ttttcaatatgaaatgttgatact |
47165789 |
T |
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| Q |
159 |
aagcgctccctctagtcttgaatataagcaaaagt |
193 |
Q |
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| T |
47165790 |
aaacgctctctctggtcttaaatatgaacaaaagt |
47165824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 39
Target Start/End: Original strand, 47165614 - 47165644
Alignment:
| Q |
9 |
gtcatggtttcatatattgaatgcatctaca |
39 |
Q |
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| T |
47165614 |
gtcatggtttcatatattgaatgcatctaca |
47165644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 48696083 - 48696137
Alignment:
| Q |
59 |
cttcacatgcttaatttgtcttgtaggatataaagccccaattttaaggtatgat |
113 |
Q |
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| T |
48696083 |
cttcacatgctttatttgttttgtaggatatgaatctccaattataaggtatgat |
48696137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 48687252 - 48687297
Alignment:
| Q |
65 |
atgcttaatttgtcttgtaggatataaagccccaattttaaggtat |
110 |
Q |
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| T |
48687252 |
atgcttaatttgtcttgcaggatatgaagcgccaaatttaaggtat |
48687297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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