View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13132_low_11 (Length: 284)

Name: NF13132_low_11
Description: NF13132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13132_low_11
NF13132_low_11
[»] chr4 (15 HSPs)
chr4 (30-224)||(10203729-10203921)
chr4 (193-268)||(32063616-32063691)
chr4 (193-265)||(27068986-27069058)
chr4 (200-260)||(30642433-30642493)
chr4 (193-265)||(54858636-54858708)
chr4 (193-252)||(52573317-52573376)
chr4 (193-265)||(10408167-10408239)
chr4 (193-265)||(27891660-27891732)
chr4 (193-265)||(50503901-50503973)
chr4 (193-268)||(39667054-39667129)
chr4 (193-252)||(45463351-45463410)
chr4 (193-251)||(51859497-51859555)
chr4 (201-250)||(37976244-37976293)
chr4 (201-250)||(54086786-54086835)
chr4 (193-265)||(54858838-54858910)
[»] chr6 (16 HSPs)
chr6 (30-195)||(1193170-1193333)
chr6 (103-195)||(896999-897091)
chr6 (103-176)||(1237493-1237566)
chr6 (117-195)||(1182220-1182298)
chr6 (193-265)||(22502850-22502922)
chr6 (199-250)||(11435955-11436006)
chr6 (193-268)||(15115412-15115487)
chr6 (193-269)||(15913826-15913902)
chr6 (193-265)||(21836308-21836380)
chr6 (193-265)||(31407156-31407228)
chr6 (193-252)||(7160893-7160952)
chr6 (193-268)||(8089516-8089591)
chr6 (202-268)||(8090216-8090282)
chr6 (194-252)||(10781437-10781495)
chr6 (193-265)||(7905521-7905593)
chr6 (193-265)||(21836107-21836178)
[»] chr8 (13 HSPs)
chr8 (193-268)||(2535830-2535905)
chr8 (193-265)||(15230209-15230281)
chr8 (193-251)||(34177250-34177308)
chr8 (193-265)||(10445613-10445685)
chr8 (193-252)||(42945203-42945262)
chr8 (193-252)||(44664597-44664656)
chr8 (201-250)||(1425144-1425193)
chr8 (193-265)||(6471968-6472040)
chr8 (201-269)||(8747552-8747620)
chr8 (193-265)||(8997967-8998039)
chr8 (193-265)||(25124639-25124711)
chr8 (193-265)||(25124841-25124913)
chr8 (193-265)||(35634377-35634449)
[»] chr7 (19 HSPs)
chr7 (193-268)||(18855934-18856009)
chr7 (193-268)||(32688498-32688573)
chr7 (193-250)||(18087618-18087675)
chr7 (193-265)||(25628554-25628626)
chr7 (193-265)||(22081837-22081909)
chr7 (193-265)||(32068374-32068446)
chr7 (193-265)||(42618189-42618261)
chr7 (193-264)||(12228462-12228533)
chr7 (201-264)||(17886778-17886841)
chr7 (193-252)||(23058707-23058766)
chr7 (193-268)||(46205587-46205662)
chr7 (193-251)||(33808413-33808471)
chr7 (193-265)||(10600227-10600299)
chr7 (200-260)||(12229359-12229419)
chr7 (193-265)||(22081635-22081707)
chr7 (193-265)||(25628756-25628828)
chr7 (193-265)||(32068172-32068244)
chr7 (193-265)||(32934424-32934496)
chr7 (193-252)||(39274959-39275019)
[»] chr2 (8 HSPs)
chr2 (193-268)||(39936527-39936602)
chr2 (193-261)||(199088-199156)
chr2 (193-265)||(8710746-8710818)
chr2 (193-265)||(15604617-15604689)
chr2 (200-268)||(25231135-25231203)
chr2 (194-265)||(8342458-8342529)
chr2 (201-250)||(39423803-39423852)
chr2 (193-269)||(41587306-41587382)
[»] scaffold0775 (1 HSPs)
scaffold0775 (193-268)||(6258-6333)
[»] chr1 (11 HSPs)
chr1 (193-252)||(7371379-7371438)
chr1 (193-265)||(49955423-49955495)
chr1 (193-265)||(40714520-40714592)
chr1 (193-268)||(32132377-32132452)
chr1 (193-252)||(35038544-35038603)
chr1 (193-251)||(28324894-28324952)
chr1 (201-250)||(47999214-47999263)
chr1 (193-265)||(31058335-31058407)
chr1 (201-265)||(34464525-34464589)
chr1 (193-265)||(35040892-35040964)
chr1 (193-265)||(49955625-49955697)
[»] scaffold0042 (1 HSPs)
scaffold0042 (193-265)||(12058-12130)
[»] chr3 (18 HSPs)
chr3 (200-268)||(32431479-32431547)
chr3 (193-252)||(9368581-9368640)
chr3 (193-268)||(47857525-47857600)
chr3 (193-265)||(3469276-3469348)
chr3 (193-265)||(32306500-32306572)
chr3 (193-265)||(37778551-37778623)
chr3 (193-265)||(52032214-52032286)
chr3 (193-268)||(1078609-1078684)
chr3 (201-268)||(21185983-21186050)
chr3 (192-255)||(26479204-26479267)
chr3 (193-252)||(29118816-29118875)
chr3 (193-252)||(35643940-35643999)
chr3 (193-252)||(40788698-40788757)
chr3 (193-268)||(47856460-47856535)
chr3 (201-250)||(33689472-33689521)
chr3 (193-265)||(11910775-11910847)
chr3 (193-265)||(13948856-13948928)
chr3 (193-265)||(47551569-47551641)
[»] scaffold0020 (1 HSPs)
scaffold0020 (201-250)||(139929-139978)
[»] scaffold0388 (1 HSPs)
scaffold0388 (193-265)||(12517-12589)
[»] scaffold0328 (2 HSPs)
scaffold0328 (193-265)||(11216-11288)
scaffold0328 (193-265)||(11418-11490)
[»] scaffold0006 (2 HSPs)
scaffold0006 (193-265)||(222067-222139)
scaffold0006 (193-265)||(221866-221937)
[»] chr5 (8 HSPs)
chr5 (193-265)||(17544326-17544398)
chr5 (193-252)||(8875538-8875597)
chr5 (201-250)||(21265234-21265283)
chr5 (201-250)||(32242530-32242579)
chr5 (201-249)||(5024111-5024159)
chr5 (193-265)||(20152857-20152929)
chr5 (193-265)||(20153196-20153268)
chr5 (193-265)||(33871616-33871688)
[»] scaffold0771 (1 HSPs)
scaffold0771 (193-265)||(996-1068)
[»] scaffold0599 (1 HSPs)
scaffold0599 (193-265)||(2469-2541)
[»] scaffold0008 (1 HSPs)
scaffold0008 (199-255)||(238341-238397)


Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 30 - 224
Target Start/End: Complemental strand, 10203921 - 10203729
Alignment:
Q  30 aacaaaactaaatacaagtataataatcacatacacactagagagcacttatcacttaatcacannnnnnnnnaaccacatactcattagagagcaagtg 129  Q
    |||||| |||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||         ||||||||||||||||||||||||||     
T  10203921 aacaaatctaaatacaagtataacaatcacatactcactagagagcacttatcacttcatcacattttttt--aaccacatactcattagagagcaagta 10203824  T
Q  130 aaaaaattcttagaaatcatattcatctacgatgcaaaaaagaaggcacattcctgtattttataatttgatgacgtggcaattattaagtgggt 224  Q
    || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  10203823 aacaaattcttagaaatcatattcatctacgatgaaaaaaagaaggcacattcctgtattttataatttgatgacgtggcagtcattaagtgggt 10203729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 32063616 - 32063691
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaattt 268  Q
    |||||||||||||||||||| |||||||| ||  | ||||  |||||||||| |||||||||| ||||||||||||    
T  32063616 taatttgatgacgtggcaataattaagtgcgtgcagggacggaattttaaatgattaaactttgcaagggtaattt 32063691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 27069058 - 27068986
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||||||||| | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  27069058 taatttgatgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 27068986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 30642433 - 30642493
Alignment:
Q  200 atgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaag 260  Q
    ||||||||||| | |||||||||||||| |||| ||||||||||| |||||||||| ||||    
T  30642433 atgacgtggcagtcattaagtgggtcaagggacgaaattttaaatgattaaactttgcaag 30642493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 54858708 - 54858636
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||||||||| | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  54858708 taatttgatgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 54858636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 52573376 - 52573317
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaac 252  Q
    |||||||||||||||||| | ||||||| |||||| |||| ||||||||||| |||||||    
T  52573376 taatttgatgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaaac 52573317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 10408167 - 10408239
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    ||||||||||| |||||| | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  10408167 taatttgatgatgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 10408239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 27891732 - 27891660
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    ||||||||||||||| || | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  27891732 taatttgatgacgtgacagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 27891660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 50503973 - 50503901
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||||||||| | ||||||| |||||| ||||  |||||||||| |||||||  | |||||||||    
T  50503973 taatttgatgacgtggcagtgattaagttggtcaaaggacggaattttaaatgattaaacaatgcaagggtaa 50503901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 39667054 - 39667129
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaattt 268  Q
    |||||||||||||||||  | ||||||| ||||||  ||| ||||||||||| |||||||  | ||||||||||||    
T  39667054 taatttgatgacgtggcggtgattaagttggtcaaaagacgaaattttaaatgattaaacaatgcaagggtaattt 39667129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 45463351 - 45463410
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaac 252  Q
    |||||||||||||||| | | ||||||| |||||| | |||||||||||||| |||||||    
T  45463351 taatttgatgacgtggtagtgattaagttggtcaaagaacaaaattttaaatgattaaac 45463410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 51859555 - 51859497
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaa 251  Q
    ||||||||||| |||||| | ||||||| |||||| |||| ||||||||||| ||||||    
T  51859555 taatttgatgatgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaaa 51859497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 37976293 - 37976244
Alignment:
Q  201 tgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaa 250  Q
    |||||||||||| ||||||| |||||| |||| ||||||||||| |||||    
T  37976293 tgacgtggcaatgattaagttggtcaaaggacgaaattttaaatgattaa 37976244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 54086835 - 54086786
Alignment:
Q  201 tgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaa 250  Q
    |||||||||| | ||||||| |||||| |||||||||||||||| |||||    
T  54086835 tgacgtggcagtgattaagttggtcaaaggacaaaattttaaatgattaa 54086786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 54858838 - 54858910
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||| ||| | | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  54858838 taatttgatgacttggtagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 54858910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 30 - 195
Target Start/End: Complemental strand, 1193333 - 1193170
Alignment:
Q  30 aacaaaactaaatacaagtataataatcacatacacactagagagcacttatcacttaatcacannnnnnnnnaaccacatactcattagagagcaagtg 129  Q
    |||||| |||||||||||||||||||||| |||| ||| ||||||||||||||| || ||||||         ||||||||||||||||||||||||||     
T  1193333 aacaaatctaaatacaagtataataatcatatactcacaagagagcacttatcatttcatcacattttctt--aaccacatactcattagagagcaagta 1193236  T
Q  130 aaaaaattcttagaaatcatattcatctacgatgcaaaaaagaaggcacattcctgtattttataa 195  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||    
T  1193235 aaaaaattcttagaaatcatattcatctacgatgcaataaagaaggcacattactgtaatttataa 1193170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 195
Target Start/End: Complemental strand, 897091 - 896999
Alignment:
Q  103 aaccacatactcattagagagcaagtgaaaaaattcttagaaatcatattcatctacgatgcaaaaaagaaggcacattcctgtattttataa 195  Q
    |||||||||||||||||||||||||| ||||| |||| ||||| ||||| |||| || |||||| |||||||||||| | |||| ||||||||    
T  897091 aaccacatactcattagagagcaagtaaaaaatttctaagaaaccatatacatccacaatgcaacaaagaaggcacaatactgttttttataa 896999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 1237493 - 1237566
Alignment:
Q  103 aaccacatactcattagagagcaagtgaaaaaattcttagaaatcatattcatctacgatgcaaaaaagaaggc 176  Q
    ||||||||||||||||||| |||||| ||| |||||||||||| ||||| |||| || |||||| |||||||||    
T  1237493 aaccacatactcattagagtgcaagtaaaataattcttagaaaccatatacatccacaatgcaataaagaaggc 1237566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 195
Target Start/End: Complemental strand, 1182298 - 1182220
Alignment:
Q  117 tagagagcaagtgaaaaaattcttagaaatcatattcatctacgatgcaaaaaagaaggcacattcctgtattttataa 195  Q
    |||||||||||| |||||||||||||||| ||||| |||| || || ||| |||||||||||| | | |||||||||||    
T  1182298 tagagagcaagtaaaaaaattcttagaaaccatatacatccacaatacaataaagaaggcacagtacggtattttataa 1182220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 22502922 - 22502850
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||| ||||| ||||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  22502922 taatttgatgacttggcagttattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 22502850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 11435955 - 11436006
Alignment:
Q  199 gatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaa 250  Q
    |||||||||||||| |||||||||||||| |||| ||||||||||| |||||    
T  11435955 gatgacgtggcaatgattaagtgggtcaagggacgaaattttaaatgattaa 11436006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 15115487 - 15115412
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaattt 268  Q
    |||||||||||||||| | | |||||||||||  | |||| ||||||||||| |||||||||| ||||| ||||||    
T  15115487 taatttgatgacgtggtagtaattaagtgggtgtaaggactaaattttaaatgattaaactttgcaaggctaattt 15115412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 15913826 - 15913902
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaatttt 269  Q
    ||||||||||||||| || | ||||||| |||||| |||| ||||||||||| |||||||  | || ||||||||||    
T  15913826 taatttgatgacgtgacagtgattaagttggtcaaaggacgaaattttaaattattaaacaatacaggggtaatttt 15913902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 21836308 - 21836380
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||| ||||| | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  21836308 taatttgatgacttggcagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 21836380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 31407156 - 31407228
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    ||||||||||||||| || | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  31407156 taatttgatgacgtgacagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 31407228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 7160952 - 7160893
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaac 252  Q
    |||||||||||||||| | | ||||||| |||||| |||| ||||||||||| |||||||    
T  7160952 taatttgatgacgtggtagtgattaagttggtcaaaggacgaaattttaaatgattaaac 7160893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 8089591 - 8089516
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaattt 268  Q
    ||||||||||||||| |  | ||||||||||| || |||| ||||||||||| |||||||  | ||||||||||||    
T  8089591 taatttgatgacgtgtcggtcattaagtgggttaagggacgaaattttaaatgattaaacaatgcaagggtaattt 8089516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 8090216 - 8090282
Alignment:
Q  202 gacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaattt 268  Q
    ||||||||||| ||||| ||||   | |||| ||||||||||| |||||||||| ||||||||||||    
T  8090216 gacgtggcaataattaactgggctcagggaccaaattttaaatgattaaactttgcaagggtaattt 8090282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 10781437 - 10781495
Alignment:
Q  194 aatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaac 252  Q
    ||||||||||| ||| | | ||||||| |||||| | ||||||||||||||||||||||    
T  10781437 aatttgatgacttggtagtgattaagttggtcaaagaacaaaattttaaataattaaac 10781495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 7905521 - 7905593
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||||||||| | ||||||| ||||||  ||| |||||| |||| |||||||  | |||||||||    
T  7905521 taatttgatgacgtggcagtgattaagttggtcaaatgacgaaatttgaaatgattaaacaatgcaagggtaa 7905593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 21836178 - 21836107
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||||||||| | |||||||  ||||| |||| ||||||||||| |||||||  | |||||||||    
T  21836178 taatttgatgacgtggcagtgattaagt-tgtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 21836107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 2535830 - 2535905
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaattt 268  Q
    ||||||||||| |||||| | |||||||||||||| |||| ||||||||||| ||||||||||  |||||||||||    
T  2535830 taatttgatgatgtggcagtcattaagtgggtcaagggacgaaattttaaatgattaaactttgtaagggtaattt 2535905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 15230209 - 15230281
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||||||||| | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  15230209 taatttgatgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 15230281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 34177250 - 34177308
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaa 251  Q
    ||||||||||| |||||| | |||||||||||||| |||| ||||||||||| ||||||    
T  34177250 taatttgatgatgtggcagtcattaagtgggtcaagggacgaaattttaaatgattaaa 34177308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 10445613 - 10445685
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||||||||| | ||||||| ||||||  ||| ||||||||||| |||||||  | |||||||||    
T  10445613 taatttgatgacgtggcagtgattaagttggtcaaaagacgaaattttaaatgattaaacaatgcaagggtaa 10445685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 42945262 - 42945203
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaac 252  Q
    |||||||||||| ||||| | ||||||| |||||| |||| ||||||||||| |||||||    
T  42945262 taatttgatgacttggcagtgattaagttggtcaaaggacgaaattttaaatgattaaac 42945203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 44664656 - 44664597
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaac 252  Q
    |||||||||||||||||| | ||||||| ||||||  ||| ||||||||||| |||||||    
T  44664656 taatttgatgacgtggcagtgattaagttggtcaaatgacgaaattttaaatgattaaac 44664597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 1425193 - 1425144
Alignment:
Q  201 tgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaa 250  Q
    |||||||||||| ||||||| |||||| |||| ||||||||||| |||||    
T  1425193 tgacgtggcaatgattaagttggtcaaaggactaaattttaaatgattaa 1425144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 6471968 - 6472040
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    ||||||||| || ||| | | ||||||| |||||| |||||||||||||||| |||||||  | |||||||||    
T  6471968 taatttgataacttggtagtgattaagttggtcaaaggacaaaattttaaatgattaaacaatgcaagggtaa 6472040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 8747552 - 8747620
Alignment:
Q  201 tgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaatttt 269  Q
    |||||||||  | ||||||||||| || |||| ||||||||||| |||||  ||| |||||||||||||    
T  8747552 tgacgtggcggtgattaagtgggttaagggacgaaattttaaatgattaatgtttgcaagggtaatttt 8747620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 8997967 - 8998039
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    ||||||||||||||| || | ||||||| |||||| ||||  |||||||||| |||||||  | |||||||||    
T  8997967 taatttgatgacgtgacagtgattaagttggtcaaaggacggaattttaaatgattaaacaatgcaagggtaa 8998039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 25124711 - 25124639
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||| ||||| |  |||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  25124711 taatttgatgacttggcagtggttaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 25124639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 25124841 - 25124913
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||||||||| | ||||||| | |||| |||  ||||||||||| |||||||  | |||||||||    
T  25124841 taatttgatgacgtggcagtgattaagttgttcaaaggatgaaattttaaatgattaaacaatgcaagggtaa 25124913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 35634377 - 35634449
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    ||||||||||||||| || | ||||||| ||| || |||| ||||||||||| |||||||  | |||||||||    
T  35634377 taatttgatgacgtgacagtgattaagttggttaaaggacgaaattttaaatgattaaacaatgcaagggtaa 35634449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 18855934 - 18856009
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaattt 268  Q
    ||||||||||||||| || | ||||||||||| || |||| ||||||||||| |||||||||| ||||||||||||    
T  18855934 taatttgatgacgtgtcagtcattaagtgggttaagggacgaaattttaaatgattaaactttgcaagggtaattt 18856009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 32688498 - 32688573
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaattt 268  Q
    |||||||||||||||||| |||||||||||||||| |||| ||||||||||| |||||  ||| |||||| |||||    
T  32688498 taatttgatgacgtggcagttattaagtgggtcaagggacgaaattttaaatgattaatatttgcaagggcaattt 32688573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 18087618 - 18087675
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaa 250  Q
    |||||||||||||||||| | ||||||||||| || |||||||||||||||| |||||    
T  18087618 taatttgatgacgtggcagtcattaagtgggttaagggacaaaattttaaatgattaa 18087675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 25628626 - 25628554
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||||||||| | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  25628626 taatttgatgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 25628554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 22081837 - 22081909
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||| ||||||| ||||||| ||||||  ||| ||||||||||| |||||||  | |||||||||    
T  22081837 taatttgatgacttggcaatgattaagttggtcaaatgacgaaattttaaatgattaaacaatgcaagggtaa 22081909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 32068374 - 32068446
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||||||||| | ||||||| ||||||  ||| ||||||||||| |||||||  | |||||||||    
T  32068374 taatttgatgacgtggcagtgattaagttggtcaaatgacgaaattttaaatgattaaacaatgcaagggtaa 32068446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 42618189 - 42618261
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    ||||||||||||||| || | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  42618189 taatttgatgacgtgacagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 42618261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 264
Target Start/End: Complemental strand, 12228533 - 12228462
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggta 264  Q
    ||||||||||||||| || | ||||||||||| ||  ||| ||||||||||| ||||||||||  |||||||    
T  12228533 taatttgatgacgtgacagtcattaagtgggttaaacgacgaaattttaaatgattaaactttgtaagggta 12228462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 17886778 - 17886841
Alignment:
Q  201 tgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggta 264  Q
    |||||||||| | |||||||||||||| |||| ||||||||||| |||||  ||| ||||||||    
T  17886778 tgacgtggcagtgattaagtgggtcaagggacgaaattttaaatgattaatatttgcaagggta 17886841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 23058707 - 23058766
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaac 252  Q
    |||||||||||||||||| | ||||||| ||||||  ||| ||||||||||| |||||||    
T  23058707 taatttgatgacgtggcagtaattaagttggtcaaatgacgaaattttaaatgattaaac 23058766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 46205587 - 46205662
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaattt 268  Q
    |||||||||||||||  | | ||||||| |||||| |||| ||||||||||| |||||||  | ||||||||||||    
T  46205587 taatttgatgacgtgatagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaattt 46205662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 33808471 - 33808413
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaa 251  Q
    ||||||||||||| ||||   ||||| ||||||||||||| ||||||||||| ||||||    
T  33808471 taatttgatgacggggcagcgattaactgggtcaatggacgaaattttaaatgattaaa 33808413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 10600227 - 10600299
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||| || || | ||||||| |||||| |||||||||||| ||| |||||||  | |||||||||    
T  10600227 taatttgatgacatgacagtgattaagttggtcaaaggacaaaattttgaatgattaaacaatgcaagggtaa 10600299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 12229359 - 12229419
Alignment:
Q  200 atgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaag 260  Q
    ||||||||||| | ||||||||||| || |||| ||||||| ||| |||||||||| ||||    
T  12229359 atgacgtggcagtcattaagtgggttaagggacgaaatttttaatgattaaactttgcaag 12229419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 22081707 - 22081635
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||| ||||| | ||||||| | |||| |||| ||||||||||| |||||||  | |||||||||    
T  22081707 taatttgatgacttggcagtgattaagttgatcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 22081635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 25628756 - 25628828
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||| || || | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  25628756 taatttgatgacttgacagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 25628828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 32068244 - 32068172
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||| ||||| | ||||||| |||||| | || ||||||||||| |||||||  | |||||||||    
T  32068244 taatttgatgacttggcattgattaagttggtcaaagtacgaaattttaaatgattaaacaatgcaagggtaa 32068172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 32934496 - 32934424
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||| ||| | | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  32934496 taatttgatgacttggtagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 32934424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 39275019 - 39274959
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtc-aatggacaaaattttaaataattaaac 252  Q
    |||||||||||||||||| | ||||||| |||| || |||| ||||||||||| |||||||    
T  39275019 taatttgatgacgtggcagtgattaagttggtcaaaaggacgaaattttaaatgattaaac 39274959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 39936527 - 39936602
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaattt 268  Q
    |||||||||||||||||| | ||||| | |||||| |||| ||||||||||| |||||||||| ||||||||||||    
T  39936527 taatttgatgacgtggcattgattaaattggtcaaaggacgaaattttaaatgattaaactttgcaagggtaattt 39936602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 199156 - 199088
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagg 261  Q
    ||||||||||| ||| || | ||||||||||| || |||||||||||||||| |||||||||| |||||    
T  199156 taatttgatgatgtgacagtcattaagtgggttaagggacaaaattttaaatgattaaactttgcaagg 199088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 8710746 - 8710818
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||||||||| | || |||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  8710746 taatttgatgacgtggcagtgataaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 8710818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 15604617 - 15604689
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    ||||||||||||| |||| | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  15604617 taatttgatgacggggcagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 15604689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 25231135 - 25231203
Alignment:
Q  200 atgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaattt 268  Q
    ||||||||||| | ||||| |||| ||| |||| ||||||||||| |||||| ||| ||||||||||||    
T  25231135 atgacgtggcagtcattaactgggacaagggacgaaattttaaatgattaaagtttgcaagggtaattt 25231203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 265
Target Start/End: Original strand, 8342458 - 8342529
Alignment:
Q  194 aatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||| |||| | ||||||| | |||| |||| |||||||||||||||||||  | |||||||||    
T  8342458 aatttgatgacgcggcagtgattaagttgttcaaaggacgaaattttaaataattaaacaatgcaagggtaa 8342529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 39423803 - 39423852
Alignment:
Q  201 tgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaa 250  Q
    |||||||||| | ||||||| |||||| |||||||||||||||| |||||    
T  39423803 tgacgtggcagtgattaagttggtcaaaggacaaaattttaaatgattaa 39423852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 41587382 - 41587306
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaatttt 269  Q
    ||||||||||||||| || | ||||||| ||| || |||  ||||||||||| |||||||  | |||||||||||||    
T  41587382 taatttgatgacgtgacagtgattaagttggttaaaggatgaaattttaaatgattaaacaatgcaagggtaatttt 41587306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0775 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0775
Description:

Target: scaffold0775; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 6258 - 6333
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaattt 268  Q
    |||||||||||||||||| | ||||||||||| || | || ||||||||||| ||||||| || ||||||||||||    
T  6258 taatttgatgacgtggcagtcattaagtgggttaaggaacgaaattttaaatgattaaacattgcaagggtaattt 6333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 7371438 - 7371379
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaac 252  Q
    |||||||||||||||||| | ||||||| |||||| |||| |||||||||||||||||||    
T  7371438 taatttgatgacgtggcagtgattaagttggtcaaaggacgaaattttaaataattaaac 7371379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 49955495 - 49955423
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    ||||||||||| |||||| | ||||||| |||||| |||||||||||||||| |||||||  | |||||||||    
T  49955495 taatttgatgatgtggcagtgattaagttggtcaaaggacaaaattttaaatgattaaacaatgcaagggtaa 49955423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 40714592 - 40714520
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||||||||| | ||||||| ||||||  ||| ||||||||||| |||||||  | |||||||||    
T  40714592 taatttgatgacgtggcagtgattaagttggtcaaatgacgaaattttaaatgattaaacaatgcaagggtaa 40714520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 32132452 - 32132377
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaattt 268  Q
    |||||||||||||||||| | |||||||||||  | |||| ||||||||| | ||||||||||  ||| |||||||    
T  32132452 taatttgatgacgtggcagtaattaagtgggtgtagggacgaaattttaattgattaaactttgtaagagtaattt 32132377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 35038603 - 35038544
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaac 252  Q
    |||||||||||||||||| | ||| ||| |||||| |||| ||||||||||| |||||||    
T  35038603 taatttgatgacgtggcagtgattgagttggtcaaaggacgaaattttaaatgattaaac 35038544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 28324952 - 28324894
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaa 251  Q
    |||||||||||||||||| | ||||||| ||||||  ||| ||||||||||| ||||||    
T  28324952 taatttgatgacgtggcagtgattaagttggtcaaaagacgaaattttaaatgattaaa 28324894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 47999263 - 47999214
Alignment:
Q  201 tgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaa 250  Q
    |||||||||||| ||||||| |||||| |||| ||||||||||| |||||    
T  47999263 tgacgtggcaataattaagttggtcaaaggactaaattttaaatgattaa 47999214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 31058335 - 31058407
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||||||||| | ||||||| ||||||   || ||||||||||| |||||||  | |||||||||    
T  31058335 taatttgatgacgtggcagtgattaagttggtcaaaatacgaaattttaaatgattaaacaatgcaagggtaa 31058407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 34464589 - 34464525
Alignment:
Q  201 tgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||| | ||||||| ||||||  ||| ||||||||||| ||||||| || |||||||||    
T  34464589 tgacgtggcagtgattaagttggtcaaatgacgaaattttaaatgattaaacattgcaagggtaa 34464525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 35040892 - 35040964
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||| ||| | | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  35040892 taatttgatgacttggtagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 35040964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 49955625 - 49955697
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||| ||||  | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  49955625 taatttgatgacttggcggtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 49955697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 12058 - 12130
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||||||||| | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  12058 taatttgatgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 12130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 32431479 - 32431547
Alignment:
Q  200 atgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaattt 268  Q
    ||||||||||||| |||||| ||||||| |||| |||||||||||  ||||||||| ||||| ||||||    
T  32431479 atgacgtggcaatcattaagcgggtcaagggacgaaattttaaatggttaaactttgcaaggctaattt 32431547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 9368581 - 9368640
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaac 252  Q
    |||||||||||||||||||| ||||||||||| || | || ||||||||||| |||||||    
T  9368581 taatttgatgacgtggcaatcattaagtgggttaaggaacgaaattttaaatgattaaac 9368640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 47857525 - 47857600
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaattt 268  Q
    |||||| ||||||||||| | ||||||| ||||||  ||| ||||||||||| |||||||||| ||||| ||||||    
T  47857525 taattttatgacgtggcattgattaagttggtcaaatgacgaaattttaaatgattaaactttgcaaggataattt 47857600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 3469348 - 3469276
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||||||||  | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  3469348 taatttgatgacgtggccgtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 3469276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 32306572 - 32306500
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||||||| | | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  32306572 taatttgatgacgtggtagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 32306500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 37778551 - 37778623
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||||||||| | ||||||| |||||| |||  ||||||||||| |||||||  | |||||||||    
T  37778551 taatttgatgacgtggcagtgattaagttggtcaaaggatgaaattttaaatgattaaacaatgcaagggtaa 37778623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 52032286 - 52032214
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||||||| | | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  52032286 taatttgatgacgtggtagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 52032214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 1078684 - 1078609
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaattt 268  Q
    |||||||||||| || |||| ||||| |||||  | |||| ||||||||||| |||||||||| ||||| ||||||    
T  1078684 taatttgatgacatgacaataattaaatgggtgtagggacgaaattttaaatgattaaactttacaaggttaattt 1078609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 21185983 - 21186050
Alignment:
Q  201 tgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaattt 268  Q
    |||||||||  | |||||||||||||| |||| ||||||||||| |||||  ||| ||||||||||||    
T  21185983 tgacgtggcggtgattaagtgggtcaagggacgaaattttaaatgattaaggtttgcaagggtaattt 21186050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 26479204 - 26479267
Alignment:
Q  192 ataatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttt 255  Q
    ||||| || |||| ||||||| ||||||||||| || |||||||||||||| | ||||||||||    
T  26479204 ataatctggtgacatggcaatcattaagtgggttaagggacaaaattttaagtgattaaacttt 26479267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 29118816 - 29118875
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaac 252  Q
    |||| ||||||||||||| | ||||||| |||||| |||| ||||||||||| |||||||    
T  29118816 taatgtgatgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaaac 29118875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 35643999 - 35643940
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaac 252  Q
    |||||||||||||||||| | |||||||  ||||| |||| ||||||||||| |||||||    
T  35643999 taatttgatgacgtggcagtgattaagtttgtcaaaggacgaaattttaaatgattaaac 35643940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 40788698 - 40788757
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaac 252  Q
    |||||||||||||||||| | ||||||| |||||| |||| ||||||||||  |||||||    
T  40788698 taatttgatgacgtggcagtgattaagttggtcaaaggacgaaattttaaaagattaaac 40788757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 47856535 - 47856460
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaattt 268  Q
    |||||| ||||||||  | | ||||||| ||||||  ||||||||||||||| |||||||||| |||| |||||||    
T  47856535 taatttaatgacgtgaaattgattaagttggtcaaatgacaaaattttaaatgattaaactttgcaagagtaattt 47856460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 33689521 - 33689472
Alignment:
Q  201 tgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaa 250  Q
    |||||||||| | ||||||| |||||| |||||||||||||||| |||||    
T  33689521 tgacgtggcagtgattaagttggtcaaaggacaaaattttaaatgattaa 33689472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 11910847 - 11910775
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    ||||||||| |||||| | | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  11910847 taatttgataacgtggtagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 11910775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 13948928 - 13948856
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||| || || | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  13948928 taatttgatgacttgacagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 13948856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 47551641 - 47551569
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    ||||||||||| |||||| | ||||||| |||||| |||  ||||||||||| |||||||  | |||||||||    
T  47551641 taatttgatgatgtggcagtgattaagttggtcaaaggatgaaattttaaatgattaaacaatgcaagggtaa 47551569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 139929 - 139978
Alignment:
Q  201 tgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaa 250  Q
    |||||||||| ||||||||| |||||| |||| |||||||||||||||||    
T  139929 tgacgtggcagttattaagttggtcaaaggactaaattttaaataattaa 139978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 12517 - 12589
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||||||||| | ||||||| |||||| | || ||||||||||| |||||||  | |||||||||    
T  12517 taatttgatgacgtggcagtgattaagtaggtcaaagaacgaaattttaaatgattaaacaatgcaagggtaa 12589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 11288 - 11216
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||| ||||| | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  11288 taatttgatgacttggcagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 11216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 11418 - 11490
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||||||||| | ||||||| ||||||  ||| ||||||||||| |||||||  | |||||||||    
T  11418 taatttgatgacgtggcagtgattaagttggtcaaaagacgaaattttaaatgattaaacaatgcaagggtaa 11490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 222067 - 222139
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||| ||||| | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  222067 taatttgatgacttggcagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 222139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 221937 - 221866
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||||||||| | |||||||  ||||| |||| ||||||||||| |||||||  | |||||||||    
T  221937 taatttgatgacgtggcagtgattaagt-tgtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 221866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 17544326 - 17544398
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||| || || | ||||||| |||||| |||||||||||||||| |||||||  | |||||||||    
T  17544326 taatttgatgacttgacagtgattaagttggtcaaaggacaaaattttaaatgattaaacaatgcaagggtaa 17544398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 8875597 - 8875538
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaac 252  Q
    |||||||||||||||||| | ||||||| |||||| | || ||||||||||| |||||||    
T  8875597 taatttgatgacgtggcagtgattaagttggtcaaagaacgaaattttaaatgattaaac 8875538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 21265283 - 21265234
Alignment:
Q  201 tgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaa 250  Q
    |||||||||| | ||||||| |||||| |||| |||||||||||||||||    
T  21265283 tgacgtggcagtgattaagttggtcaaaggacgaaattttaaataattaa 21265234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 32242530 - 32242579
Alignment:
Q  201 tgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaa 250  Q
    |||||||||| | ||||||| |||||| |||||||||||||||| |||||    
T  32242530 tgacgtggcagtgattaagttggtcaaaggacaaaattttaaatgattaa 32242579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 5024159 - 5024111
Alignment:
Q  201 tgacgtggcaattattaagtgggtcaatggacaaaattttaaataatta 249  Q
    |||||||||| | ||||||| |||||| |||||||||||||||| ||||    
T  5024159 tgacgtggcagtgattaagttggtcaaaggacaaaattttaaatgatta 5024111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 20152929 - 20152857
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||| ||| | | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  20152929 taatttgatgacttggtagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 20152857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 20153196 - 20153268
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||||| ||| | ||||||| |||||| |||  ||||||||||| |||||||  | |||||||||    
T  20153196 taatttgatgacgtagcagtgattaagttggtcaaaggatgaaattttaaatgattaaacaatgcaagggtaa 20153268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 33871616 - 33871688
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||||| ||| | ||||||| ||||||  ||| ||||||||||| |||||||  | |||||||||    
T  33871616 taatttgatgacgtagcagtgattaagttggtcaaatgacgaaattttaaatgattaaacaatgcaagggtaa 33871688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0771 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 1068 - 996
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    |||||||||||| || || | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  1068 taatttgatgacttgacagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 2541 - 2469
Alignment:
Q  193 taatttgatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttttcaagggtaa 265  Q
    ||||||||| |||||| | | ||||||| |||||| |||| ||||||||||| |||||||  | |||||||||    
T  2541 taatttgataacgtggtagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaagggtaa 2469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 238397 - 238341
Alignment:
Q  199 gatgacgtggcaattattaagtgggtcaatggacaaaattttaaataattaaacttt 255  Q
    |||||||||||| | ||||||||||| || |||| ||||||||||  ||||||||||    
T  238397 gatgacgtggcagtcattaagtgggttaagggacgaaattttaaaagattaaacttt 238341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University