View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13132_low_13 (Length: 265)
Name: NF13132_low_13
Description: NF13132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13132_low_13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 265
Target Start/End: Original strand, 48713953 - 48714203
Alignment:
| Q |
15 |
acaagcagcattcaatttgtgagaagcaaatttctttggctggattttacccacatgtagtgggtcctacacatacatctaatctagttataaatagaaa |
114 |
Q |
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| T |
48713953 |
acaagcagcattcaatttgttagaagcaaatttctttggctggattttacccgcatgtagtgggtcctacacatacatctaatctagttataaatagaaa |
48714052 |
T |
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| Q |
115 |
tacgagtgttgagtattttggagggaagtaaaattaaaaggtcaaacaaacaaaaatgttaggtccggcatgctgctcaaacccaccaattctgaactcc |
214 |
Q |
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| T |
48714053 |
tgtgagtgttaagtattttggagggaagtaaaattaaaaggtcaaacaaacaaaaatgttaggtccggcatgctgctcaaacccaccaattctgaactct |
48714152 |
T |
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| Q |
215 |
ttcagtggtgctggccatgttgctaaacttggtggtgttgatgcttatctc |
265 |
Q |
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| T |
48714153 |
ttcagtggtgctggccatgttgctaaacttggtggtgttgatgcttatctc |
48714203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 88 - 261
Target Start/End: Original strand, 48695754 - 48695933
Alignment:
| Q |
88 |
tacatctaatctagttataaatagaaatacgagtgttgagtattttggagggaagtaaaatta--------aaaggtcaaacaaacaaaaatgttaggtc |
179 |
Q |
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| T |
48695754 |
tacatctagtctagttataaatagaaatgggagtgttgagtatt--ggagggaagtgcagttagcaaaacaaaaagtcaaagaaacaaaaatgtcaggtc |
48695851 |
T |
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| Q |
180 |
cggcatgctgctcaaacccaccaattctgaactccttcagtggtgctggccatgttgctaaacttggtggtgttgatgctta |
261 |
Q |
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| T |
48695852 |
atgcatgctgctctaacccaccaattctgaacccctttagtggagctggccatgttgaaaaaattggtggtcttgatgctta |
48695933 |
T |
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