View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13132_low_15 (Length: 256)

Name: NF13132_low_15
Description: NF13132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13132_low_15
NF13132_low_15
[»] chr3 (10 HSPs)
chr3 (29-243)||(6801855-6802068)
chr3 (120-217)||(7606335-7606432)
chr3 (37-111)||(6483811-6483885)
chr3 (173-241)||(6483900-6483967)
chr3 (21-97)||(22214659-22214735)
chr3 (26-85)||(32064438-32064497)
chr3 (21-62)||(11253496-11253536)
chr3 (21-62)||(43875642-43875683)
chr3 (23-75)||(24280707-24280759)
chr3 (12-72)||(31337426-31337486)
[»] chr1 (22 HSPs)
chr1 (25-72)||(25479579-25479626)
chr1 (18-72)||(35351030-35351084)
chr1 (21-78)||(37241841-37241898)
chr1 (21-88)||(7218083-7218150)
chr1 (21-74)||(17269244-17269297)
chr1 (21-62)||(25005832-25005873)
chr1 (38-97)||(47020518-47020577)
chr1 (21-72)||(49888761-49888812)
chr1 (21-63)||(5421954-5421996)
chr1 (21-75)||(29793776-29793830)
chr1 (21-75)||(33976680-33976734)
chr1 (21-115)||(39270407-39270501)
chr1 (21-115)||(44422693-44422787)
chr1 (21-78)||(5592704-5592761)
chr1 (27-72)||(5924055-5924100)
chr1 (21-62)||(23902102-23902143)
chr1 (33-78)||(24460426-24460471)
chr1 (29-74)||(42169585-42169630)
chr1 (27-75)||(5756708-5756756)
chr1 (19-75)||(31294543-31294599)
chr1 (21-69)||(33976173-33976221)
chr1 (30-62)||(50319273-50319305)
[»] chr6 (7 HSPs)
chr6 (21-75)||(8035170-8035224)
chr6 (9-72)||(4006696-4006759)
chr6 (21-58)||(2727895-2727932)
chr6 (21-60)||(281885-281924)
chr6 (21-72)||(31812038-31812089)
chr6 (21-62)||(2117397-2117438)
chr6 (38-75)||(6647398-6647435)
[»] chr4 (9 HSPs)
chr4 (27-97)||(11264301-11264371)
chr4 (9-75)||(2996555-2996621)
chr4 (12-62)||(42866053-42866103)
chr4 (17-75)||(1028192-1028250)
chr4 (21-71)||(8468942-8468992)
chr4 (21-75)||(35571653-35571707)
chr4 (21-61)||(16494841-16494881)
chr4 (21-69)||(18630674-18630722)
chr4 (9-53)||(24370997-24371041)
[»] chr8 (12 HSPs)
chr8 (29-74)||(26473775-26473820)
chr8 (21-72)||(31862487-31862538)
chr8 (19-71)||(29973073-29973125)
chr8 (22-58)||(34770887-34770923)
chr8 (22-70)||(43709268-43709316)
chr8 (21-72)||(10075576-10075627)
chr8 (23-74)||(39551232-39551283)
chr8 (38-75)||(1433559-1433596)
chr8 (21-62)||(6509338-6509379)
chr8 (21-78)||(8062518-8062575)
chr8 (9-62)||(30627937-30627990)
chr8 (24-72)||(40014820-40014868)
[»] chr7 (9 HSPs)
chr7 (10-75)||(40530431-40530496)
chr7 (21-62)||(28340879-28340920)
chr7 (21-78)||(46104586-46104643)
chr7 (23-85)||(27493896-27493958)
chr7 (23-85)||(27500554-27500616)
chr7 (23-85)||(27515346-27515408)
chr7 (12-74)||(39542323-39542385)
chr7 (21-62)||(3610775-3610816)
chr7 (29-78)||(48917365-48917414)
[»] chr2 (11 HSPs)
chr2 (26-75)||(10884543-10884592)
chr2 (21-75)||(9477946-9478000)
chr2 (21-71)||(39983336-39983386)
chr2 (21-74)||(938533-938586)
chr2 (23-80)||(9556235-9556292)
chr2 (21-78)||(36863644-36863701)
chr2 (19-71)||(13736319-13736371)
chr2 (21-72)||(6993749-6993800)
chr2 (21-72)||(18179265-18179316)
chr2 (21-69)||(1625894-1625942)
chr2 (29-85)||(19826266-19826322)
[»] chr5 (3 HSPs)
chr5 (11-67)||(18543226-18543282)
chr5 (21-72)||(2568652-2568703)
chr5 (21-71)||(15003540-15003590)
[»] scaffold0003 (1 HSPs)
scaffold0003 (30-115)||(306329-306414)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 29 - 243
Target Start/End: Original strand, 6801855 - 6802068
Alignment:
Q  29 taagttgtattcataagctatcctagagagcttacgaaaataagttggaatcagtttgtggccatgtcacagactgttttcataagccgtgacaaatggt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  6801855 taagttgtattcataagctatcctagagagcttacgaaaataagttggaatcagtttgtggccatgtcacagactgttttcataagctgtgacaa-tggt 6801953  T
Q  129 ttcagaagttcgtatgccaatagattaaatcaaataaactgatctaaacagatcctaagaagagagataaatcaattttggaaatgtatttgctctaaaa 228  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  6801954 ttcagaagttcatatgccaatagattaaatcaaataaactgatctaaacagattctaagaagagagataaatcaattttggaaatgtattttctctaaaa 6802053  T
Q  229 aagaagtgatatgtc 243  Q
    ||||| |||||||||    
T  6802054 aagaaatgatatgtc 6802068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 7606432 - 7606335
Alignment:
Q  120 acaaatggtttcagaagttcgtatgccaatagattaaatcaaataaactgatctaaacagatcctaagaagagagataaatcaattttggaaatgtat 217  Q
    ||||||||||| |||||||| ||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7606432 acaaatggtttaagaagttcatatgccaatagataaaatcatataaactgatctaaatagatcctaagaagagagataaatcaattttggaaatgtat 7606335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 6483811 - 6483885
Alignment:
Q  37 attcataagctatcctagagagcttacgaaaataagttggaatcagtttgtggccatgtcacagactgttttcat 111  Q
    ||||||||||||||||||||||||||  |||||||| || || |||||||||||||||||| |||| ||||||||    
T  6483811 attcataagctatcctagagagcttattaaaataagctgaaaacagtttgtggccatgtcatagacggttttcat 6483885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 6483900 - 6483967
Alignment:
Q  173 taaacagatcctaagaagagagataaatcaattttggaaatgtatttgctctaaaaaagaagtgatatg 241  Q
    |||||||||||||||||||||||| | |||||||||||||||||||| |||| |||||||| |||||||    
T  6483900 taaacagatcctaagaagagagatta-tcaattttggaaatgtattttctctgaaaaagaaatgatatg 6483967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 22214735 - 22214659
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataagttggaatcagtttgtggccatgtca 97  Q
    |||| ||||||||||| ||||||||||||||||||||  ||||| ||||||| || || ||| || ||| |||||||    
T  22214735 ataacctataagttgttttcataagctatcctagagacattacggaaataagctgaaaacagcttatggacatgtca 22214659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 32064438 - 32064497
Alignment:
Q  26 ctataagttgtattcataagctatcctagagagcttacgaaaataagttggaatcagttt 85  Q
    ||||| ||||| ||||||| |||||||| |||||||| |||||||||||| || ||||||    
T  32064438 ctatatgttgtgttcataaactatcctaaagagcttatgaaaataagttgaaaacagttt 32064497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 11253496 - 11253536
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagctta 62  Q
    |||||||||||| ||| |||||||||||||||||||||||||    
T  11253496 ataagctataagctgt-ttcataagctatcctagagagctta 11253536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 43875642 - 43875683
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagctta 62  Q
    |||||||||||||||| ||||||||||||| | |||||||||    
T  43875642 ataagctataagttgttttcataagctatcatggagagctta 43875683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 24280707 - 24280759
Alignment:
Q  23 aagctataagttgtattcataagctatcctagagagcttacgaaaataagttg 75  Q
    |||||||||| |||  |||||||||||| | ||||||||| ||||||||||||    
T  24280707 aagctataagctgttgtcataagctatcatggagagcttatgaaaataagttg 24280759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 31337486 - 31337426
Alignment:
Q  12 tgtttatacataagctataagttgtattcataagctatcctagagagcttacgaaaataag 72  Q
    ||||| || ||||| ||||||||||||||||||||||  ||||| ||||||  ||||||||    
T  31337486 tgtttttatataagttataagttgtattcataagctaatctagaaagcttatcaaaataag 31337426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 25479579 - 25479626
Alignment:
Q  25 gctataagttgtattcataagctatcctagagagcttacgaaaataag 72  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||    
T  25479579 gctataagttgttttcataagctatcctagagagcttatgaaaataag 25479626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 35351030 - 35351084
Alignment:
Q  18 tacataagctataagttgtattcataagctatcctagagagcttacgaaaataag 72  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||||| ||||||||    
T  35351030 tacattagctataagttgtcttcataaactatcctagagagcttacaaaaataag 35351084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 37241898 - 37241841
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataagttggaa 78  Q
    |||||||| ||||||| |||||||| |||||||||||||||| ||||||||| |||||    
T  37241898 ataagctagaagttgttttcataagatatcctagagagcttatgaaaataagctggaa 37241841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 7218150 - 7218083
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataagttggaatcagtttgtg 88  Q
    |||||||||||||||| ||||||| ||||||| |||| |||| |||||||||||| || ||| |||||    
T  7218150 ataagctataagttgttttcataacctatcctggagaacttatgaaaataagttgaaaacagcttgtg 7218083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 17269244 - 17269297
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataagtt 74  Q
    |||||| ||||||||| ||||||||||||||| |||||||||||  ||||||||    
T  17269244 ataagcaataagttgttttcataagctatcctggagagcttacggtaataagtt 17269297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 25005873 - 25005832
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagctta 62  Q
    |||||||||||||||| ||||||||||||||| |||||||||    
T  25005873 ataagctataagttgttttcataagctatcctggagagctta 25005832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 47020518 - 47020577
Alignment:
Q  38 ttcataagctatcctagagagcttacgaaaataagttggaatcagtttgtggccatgtca 97  Q
    ||||||||||||| ||||||||||||| |||||||||| || ||| || ||| |||||||    
T  47020518 ttcataagctatcttagagagcttacggaaataagttgtaaacaggttatggacatgtca 47020577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 49888761 - 49888812
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataag 72  Q
    ||||||||| |||||| ||||||||||||| |||||| |||| |||||||||    
T  49888761 ataagctattagttgttttcataagctatcttagagaacttatgaaaataag 49888812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 5421996 - 5421954
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttac 63  Q
    |||||||||||||||| || |||||||||| ||||||||||||    
T  5421996 ataagctataagttgttttgataagctatcttagagagcttac 5421954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 29793776 - 29793830
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataagttg 75  Q
    |||||||||||||||  ||||||||||||| | ||||||||| |||| |||||||    
T  29793776 ataagctataagttgagttcataagctatcttcgagagcttatgaaactaagttg 29793830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 33976680 - 33976734
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataagttg 75  Q
    ||||| |||||||||| ||| ||| ||||||||||||||||| | ||||||||||    
T  33976680 ataagttataagttgttttcttaacctatcctagagagcttatggaaataagttg 33976734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 39270501 - 39270407
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataagttggaatcagtttgtggccatgtcacagactgttttcataagc 115  Q
    ||||| |||||| ||| ||||||||||| | |||||||| || |||||||||||| || ||| || ||| |||| || |  ||||||||||||||    
T  39270501 ataagatataagctgttttcataagctaccatagagagcatatgaaaataagttgaaaacagcttatggacatgccaaaagctgttttcataagc 39270407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 44422693 - 44422787
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataagttggaatcagtttgtggccatgtcacagactgttttcataagc 115  Q
    |||||||||||| | | || |||||||||||| ||||||||| ||||||||| || | |||| || ||| ||||||| |  || |||||||||||    
T  44422693 ataagctataagctatttttataagctatcctggagagcttatgaaaataagctgtagtcagcttatggacatgtcataagctattttcataagc 44422787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 5592761 - 5592704
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataagttggaa 78  Q
    |||||||||||||||| |||||||||||  ||  |||||||| ||||||||| |||||    
T  5592761 ataagctataagttgttttcataagctagtcttaagagcttatgaaaataagctggaa 5592704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 5924055 - 5924100
Alignment:
Q  27 tataagttgtattcataagctatcctagagagcttacgaaaataag 72  Q
    |||||||||| |||||||| |||||||||||||||| | |||||||    
T  5924055 tataagttgttttcataagttatcctagagagcttatggaaataag 5924100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 23902143 - 23902102
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagctta 62  Q
    |||||||||||||||| |||| |||||||| |||||||||||    
T  23902143 ataagctataagttgttttcaaaagctatcttagagagctta 23902102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 24460471 - 24460426
Alignment:
Q  33 ttgtattcataagctatcctagagagcttacgaaaataagttggaa 78  Q
    |||| ||||||||||||||| |||||||||| |||||||| |||||    
T  24460471 ttgttttcataagctatccttgagagcttacaaaaataagctggaa 24460426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 42169630 - 42169585
Alignment:
Q  29 taagttgtattcataagctatcctagagagcttacgaaaataagtt 74  Q
    |||||| | ||||||||||||| | |||||||||||||||||||||    
T  42169630 taagtttttttcataagctatcttggagagcttacgaaaataagtt 42169585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 5756756 - 5756708
Alignment:
Q  27 tataagttgtattcataagctatcctagagagcttacgaaaataagttg 75  Q
    |||||||||| ||| ||||||| ||| |||||||||| |||||||||||    
T  5756756 tataagttgttttcgtaagctagcctggagagcttaccaaaataagttg 5756708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 31294599 - 31294543
Alignment:
Q  19 acataagctataagttgtattcataagctatcctagagagcttacgaaaataagttg 75  Q
    |||||| ||||||||||| ||  ||| ||||| ||||||||||| ||||||||||||    
T  31294599 acataaactataagttgtttttgtaaactatcatagagagcttatgaaaataagttg 31294543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 33976173 - 33976221
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaat 69  Q
    ||||| |||||||||| |||||||  ||||||||| |||||||||||||    
T  33976173 ataagttataagttgttttcataaattatcctagacagcttacgaaaat 33976221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 50319273 - 50319305
Alignment:
Q  30 aagttgtattcataagctatcctagagagctta 62  Q
    ||||||| |||||||||||||||||||||||||    
T  50319273 aagttgttttcataagctatcctagagagctta 50319305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 8035224 - 8035170
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataagttg 75  Q
    |||||||| ||||||| |||||||| ||||||||| |||||||||||||||||||    
T  8035224 ataagctagaagttgttttcataagttatcctagaaagcttacgaaaataagttg 8035170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 4006696 - 4006759
Alignment:
Q  9 aattgtttatacataagctataagttgtattcataagctatcctagagagcttacgaaaataag 72  Q
    |||||||| || |||||||||||||||| ||||||||||||||  ||||| ||| |||||||||    
T  4006696 aattgtttttatataagctataagttgttttcataagctatccctgagaggttatgaaaataag 4006759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 2727932 - 2727895
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagag 58  Q
    |||||||||||||||| |||||||||||||||||||||    
T  2727932 ataagctataagttgttttcataagctatcctagagag 2727895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 281924 - 281885
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagct 60  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  281924 ataagctataagctgtgttcataagctatcctagagagct 281885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 31812089 - 31812038
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataag 72  Q
    ||||| |||||||||| ||||||||||||| | ||||||||| |||||||||    
T  31812089 ataagatataagttgttttcataagctatcttggagagcttatgaaaataag 31812038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 2117397 - 2117438
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagctta 62  Q
    |||| ||||||||||| |||||||| ||||||||||||||||    
T  2117397 ataatctataagttgttttcataagttatcctagagagctta 2117438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 6647398 - 6647435
Alignment:
Q  38 ttcataagctatcctagagagcttacgaaaataagttg 75  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  6647398 ttcataagctatcttagagagcttatgaaaataagttg 6647435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 11264301 - 11264371
Alignment:
Q  27 tataagttgtattcataagctatcctagagagcttacgaaaataagttggaatcagtttgtggccatgtca 97  Q
    |||||||||| ||||||||| ||||||||||||||| | |||||||||| || |||||| ||| |||||||    
T  11264301 tataagttgttttcataagccatcctagagagcttatggaaataagttgaaaacagtttatggacatgtca 11264371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 2996555 - 2996621
Alignment:
Q  9 aattgtttatacataagctataagttgtattcataagctatcctagagagcttacgaaaataagttg 75  Q
    |||||||| || ||||| |||||||||| ||||||||||||| | |||||| || ||||||||||||    
T  2996555 aattgtttttatataagttataagttgttttcataagctatcttggagagcgtatgaaaataagttg 2996621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 42866053 - 42866103
Alignment:
Q  12 tgtttatacataagctataagttgtattcataagctatcctagagagctta 62  Q
    ||||| || |||||||||||||||| ||||||||||||||| |||||||||    
T  42866053 tgtttttatataagctataagttgttttcataagctatccttgagagctta 42866103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 1028250 - 1028192
Alignment:
Q  17 atacataagctataagttgtattcataagctatcctagagagcttacgaaaataagttg 75  Q
    |||||||||||||||| ||  |||||||| |||||| ||||||||| | ||||||||||    
T  1028250 atacataagctataagctgctttcataagatatcctggagagcttaaggaaataagttg 1028192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 8468942 - 8468992
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataa 71  Q
    ||||||||| |||||| |||||||| ||| |||||||||||| ||||||||    
T  8468942 ataagctattagttgttttcataagttattctagagagcttatgaaaataa 8468992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 35571707 - 35571653
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataagttg 75  Q
    |||||||||||| ||| ||||||||||||| |||||| |||  ||||||||||||    
T  35571707 ataagctataagctgttttcataagctatcttagagaacttgtgaaaataagttg 35571653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 16494881 - 16494841
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagctt 61  Q
    |||||||||||||||| ||||||||||||| | ||||||||    
T  16494881 ataagctataagttgttttcataagctatcttggagagctt 16494841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 18630674 - 18630722
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaat 69  Q
    |||||||||||||||| |||| ||||||||| | |||||||| ||||||    
T  18630674 ataagctataagttgttttcacaagctatccaacagagcttatgaaaat 18630722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 24371041 - 24370997
Alignment:
Q  9 aattgtttatacataagctataagttgtattcataagctatccta 53  Q
    ||||| || |||| |||||||||||||| ||||||||||||||||    
T  24371041 aattgcttttacaaaagctataagttgttttcataagctatccta 24370997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 26473820 - 26473775
Alignment:
Q  29 taagttgtattcataagctatcctagagagcttacgaaaataagtt 74  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||    
T  26473820 taagttgttttcataagctatcctagagagcttatgaaaataagtt 26473775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 31862487 - 31862538
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataag 72  Q
    |||||||||||| ||| |||||||| |||||||||||||||| |||||||||    
T  31862487 ataagctataagatgttttcataagttatcctagagagcttatgaaaataag 31862538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 29973073 - 29973125
Alignment:
Q  19 acataagctataagttgtattcataagctatcctagagagcttacgaaaataa 71  Q
    |||||||||||||||||| ||||||||||||||| ||||| ||| | ||||||    
T  29973073 acataagctataagttgttttcataagctatccttgagagtttatggaaataa 29973125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 34770887 - 34770923
Alignment:
Q  22 taagctataagttgtattcataagctatcctagagag 58  Q
    ||||||||||||||| |||||||||||||||||||||    
T  34770887 taagctataagttgttttcataagctatcctagagag 34770923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 43709268 - 43709316
Alignment:
Q  22 taagctataagttgtattcataagctatcctagagagcttacgaaaata 70  Q
    ||||||||||||||| ||||| ||||||||| ||||||||| |||||||    
T  43709268 taagctataagttgttttcatgagctatcctggagagcttatgaaaata 43709316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 10075627 - 10075576
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataag 72  Q
    ||||| |||||| | | ||||||||||||||||||||||||| |||||||||    
T  10075627 ataagttataagctattttcataagctatcctagagagcttatgaaaataag 10075576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 39551283 - 39551232
Alignment:
Q  23 aagctataagttgtattcataagctatcctagagagcttacgaaaataagtt 74  Q
    |||||||||||||| |||||||||| |||| |||||||||  ||||||||||    
T  39551283 aagctataagttgttttcataagctttcctggagagcttataaaaataagtt 39551232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 1433559 - 1433596
Alignment:
Q  38 ttcataagctatcctagagagcttacgaaaataagttg 75  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  1433559 ttcataagctatcctggagagcttatgaaaataagttg 1433596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 6509379 - 6509338
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagctta 62  Q
    |||||||||||| ||| ||||||||||||||| |||||||||    
T  6509379 ataagctataagctgttttcataagctatcctggagagctta 6509338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 8062518 - 8062575
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataagttggaa 78  Q
    |||||||||||| |||  |||||||||||| ||||||| ||| ||||||||| |||||    
T  8062518 ataagctataagatgttctcataagctatcttagagagtttatgaaaataagctggaa 8062575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 30627990 - 30627937
Alignment:
Q  9 aattgtttatacataagctataagttgtattcataagctatcctagagagctta 62  Q
    ||||||||||   ||||||||||||||| |||||||| |||| |||||||||||    
T  30627990 aattgtttatgtgtaagctataagttgttttcataagttatcttagagagctta 30627937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 40014868 - 40014820
Alignment:
Q  24 agctataagttgtattcataagctatcctagagagcttacgaaaataag 72  Q
    ||||||||||||| | ||| ||||||| | |||||||||||||||||||    
T  40014868 agctataagttgtttacatcagctatcttggagagcttacgaaaataag 40014820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 40530496 - 40530431
Alignment:
Q  10 attgtttatacataagctataagttgtattcataagctatcctagagagcttacgaaaataagttg 75  Q
    ||||||| |||| |||||||||||||| || ||||||||||||| ||| |||| ||||||||||||    
T  40530496 attgtttttacaaaagctataagttgttttaataagctatcctaaagaacttatgaaaataagttg 40530431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 28340920 - 28340879
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagctta 62  Q
    |||||||||||| ||| |||||||||||||||||||||||||    
T  28340920 ataagctataagctgttttcataagctatcctagagagctta 28340879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 46104643 - 46104586
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataagttggaa 78  Q
    |||||||||||||||| |||||||||||| ||  |||||||| ||||||||| |||||    
T  46104643 ataagctataagttgttttcataagctatgctgaagagcttatgaaaataagctggaa 46104586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 27493958 - 27493896
Alignment:
Q  23 aagctataagttgtattcataagctatcctagagagcttacgaaaataagttggaatcagttt 85  Q
    |||||||||||| | || ||| ||||||| |||||||||||||||||||| | ||| ||||||    
T  27493958 aagctataagtttttttaatatgctatccaagagagcttacgaaaataagctagaaacagttt 27493896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 27500616 - 27500554
Alignment:
Q  23 aagctataagttgtattcataagctatcctagagagcttacgaaaataagttggaatcagttt 85  Q
    |||||||||||| | || ||| ||||||| |||||||||||||||||||| | ||| ||||||    
T  27500616 aagctataagtttttttaatatgctatccaagagagcttacgaaaataagctagaaacagttt 27500554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 27515408 - 27515346
Alignment:
Q  23 aagctataagttgtattcataagctatcctagagagcttacgaaaataagttggaatcagttt 85  Q
    |||||||||||| | || ||| ||||||| |||||||||||||||||||| | ||| ||||||    
T  27515408 aagctataagtttttttaatatgctatccaagagagcttacgaaaataagctagaaacagttt 27515346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 39542385 - 39542323
Alignment:
Q  12 tgtttatacataagctataagttgtattcataagctatcctagagagcttacgaaaataagtt 74  Q
    |||||||  ||||| |||||||||| | |||||| |||||| ||||||||| |||||||||||    
T  39542385 tgtttatgtataagatataagttgtttccataagttatcctggagagcttatgaaaataagtt 39542323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 3610816 - 3610775
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagctta 62  Q
    |||||||||||||||| ||| ||| |||||||||||||||||    
T  3610816 ataagctataagttgttttcgtaaactatcctagagagctta 3610775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 48917414 - 48917365
Alignment:
Q  29 taagttgtattcataagctatcctagagagcttacgaaaataagttggaa 78  Q
    |||||||| ||||||||||||| | ||||||||| ||||||||| |||||    
T  48917414 taagttgttttcataagctatcttggagagcttatgaaaataagctggaa 48917365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 10884592 - 10884543
Alignment:
Q  26 ctataagttgtattcataagctatcctagagagcttacgaaaataagttg 75  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||||||||||    
T  10884592 ctataagctgttttcataagctatcctagagagcttatgaaaataagttg 10884543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 9477946 - 9478000
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataagttg 75  Q
    ||||| |||||||||| ||||||||||||||| ||||| ||| ||||||||||||    
T  9477946 ataagttataagttgttttcataagctatcctggagaggttatgaaaataagttg 9478000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 39983336 - 39983386
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataa 71  Q
    |||||||||||||||| ||||||||||||||| ||||||| | ||||||||    
T  39983336 ataagctataagttgttttcataagctatcctggagagctaatgaaaataa 39983386  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 938586 - 938533
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataagtt 74  Q
    ||||||||||||  |||||||||||||||| ||||||||||  |||||||||||    
T  938586 ataagctataagcggtattcataagctatcttagagagcttctgaaaataagtt 938533  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 9556235 - 9556292
Alignment:
Q  23 aagctataagttgtattcataagctatcctagagagcttacgaaaataagttggaatc 80  Q
    |||||||||  ||| |||||||||||||||||| |||||| |||||||||||| ||||    
T  9556235 aagctataaactgttttcataagctatcctagaaagcttatgaaaataagttgaaatc 9556292  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 36863701 - 36863644
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataagttggaa 78  Q
    ||||| ||||| |||| ||||||||||||| | ||||||||| |||||||||||||||    
T  36863701 ataagttataaattgttttcataagctatcttggagagcttatgaaaataagttggaa 36863644  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 13736371 - 13736319
Alignment:
Q  19 acataagctataagttgtattcataagctatcctagagagcttacgaaaataa 71  Q
    |||| ||||||||| ||| |||||||||||| |||||||||||| ||||||||    
T  13736371 acatcagctataagctgttttcataagctatactagagagcttatgaaaataa 13736319  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 6993800 - 6993749
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataag 72  Q
    |||||||||| ||||| |||||||||||| || ||||||||| |||||||||    
T  6993800 ataagctataggttgttttcataagctatgcttgagagcttatgaaaataag 6993749  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 18179316 - 18179265
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataag 72  Q
    |||||||||||| ||  ||||||||||||||| |||| ||||||||||||||    
T  18179316 ataagctataagctgctttcataagctatcctggagaacttacgaaaataag 18179265  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 1625894 - 1625942
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaat 69  Q
    ||||| |||||||||| ||||||||||||| | |||| |||||||||||    
T  1625894 ataagttataagttgttttcataagctatcttggagaacttacgaaaat 1625942  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 19826266 - 19826322
Alignment:
Q  29 taagttgtattcataagctatcctagagagcttacgaaaataagttggaatcagttt 85  Q
    |||| ||| |||||||||||| || ||||| ||| |||||||||||| |||||||||    
T  19826266 taagatgttttcataagctatactggagagtttatgaaaataagttgaaatcagttt 19826322  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 18543282 - 18543226
Alignment:
Q  11 ttgtttatacataagctataagttgtattcataagctatcctagagagcttacgaaa 67  Q
    |||||| || ||||| |||||||||| ||||||||||||||| ||||||||| ||||    
T  18543282 ttgtttttatataagatataagttgttttcataagctatcctggagagcttatgaaa 18543226  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 2568652 - 2568703
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataag 72  Q
    |||||||||||||||| ||||||||||||| | ||||||| | |||||||||    
T  2568652 ataagctataagttgttttcataagctatcatggagagctaatgaaaataag 2568703  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 15003590 - 15003540
Alignment:
Q  21 ataagctataagttgtattcataagctatcctagagagcttacgaaaataa 71  Q
    ||||||||||||| || |||||||||||||| |||||||||| | ||||||    
T  15003590 ataagctataagtggttttcataagctatccaagagagcttatggaaataa 15003540  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 306329 - 306414
Alignment:
Q  30 aagttgtattcataagctatcctagagagcttacgaaaataagttggaatcagtttgtggccatgtcacagactgttttcataagc 115  Q
    ||||||| ||||||||||||||||||||||||| | || |||| || || ||| || ||| ||||||| |  |||||| |||||||    
T  306329 aagttgttttcataagctatcctagagagcttatgtaagtaagctgaaaacagcttatgggcatgtcataagctgtttccataagc 306414  T

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