View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13132_low_16 (Length: 248)
Name: NF13132_low_16
Description: NF13132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13132_low_16 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 248
Target Start/End: Complemental strand, 1018900 - 1018664
Alignment:
| Q |
12 |
agggaaggaggcacacacgaagaataaattagtagttgttttctaaaagaaattcatgtctttcttttgaatccatataatgttttgatagccctatgaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1018900 |
agggaaggaggcacacacgaagaataaattagtagttgttttctaaaagaaattcatgtctttcttttgaatccatataatgttttgatagccctatgaa |
1018801 |
T |
|
| Q |
112 |
ggacttagatctaaatgatctttttgaagatttagttttgttgtcataggttaccaggtagttatcctgcacaagaaaactcaattattataaaaggtag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1018800 |
ggacttagatctaaatgatctttttgaagatttagttttgttgtcataggttaccaggtagttatcctgcacaagaaaactcaattattataaaaggtag |
1018701 |
T |
|
| Q |
212 |
tttagtagtcaggaaaaggtgcttaaaatttacagcc |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1018700 |
tttagtagtcaggaaaaggtgcttaaaatttacagcc |
1018664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 232
Target Start/End: Complemental strand, 1014279 - 1014159
Alignment:
| Q |
113 |
gacttagatctaaatgatctttttgaagatttagttttgttgtcataggttaccaggtagttatcctgcacaa-gaaaactcaattattataaaaggtag |
211 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| ||||| ||| ||| ||| | | | |||||||||| ||| | |
|
|
| T |
1014279 |
gacttagatctaaatgatctgtttgaagatttggttttgttgtcataggttactaggcagttaagctgggcaaggaataataagttattataaagggtgg |
1014180 |
T |
|
| Q |
212 |
tttagtagtcaggaaaaggtg |
232 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
1014179 |
tttagtaggtaggaaaaggtg |
1014159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 1010161 - 1010115
Alignment:
| Q |
113 |
gacttagatctaaatgatctttttgaagatttagttttgttgtcata |
159 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| |||||||||||||| |
|
|
| T |
1010161 |
gacttagatctaaatgatctgtttatagatttggttttgttgtcata |
1010115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 12 - 174
Target Start/End: Original strand, 8317016 - 8317178
Alignment:
| Q |
12 |
agggaaggaggcacacacgaagaataaattagtagttgttttctaaaagaaattcatgtctttcttttgaatccatataatgttttgatagccctatgaa |
111 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8317016 |
agggaaggacgcacacacgaagaataaattagtagttgttttctaaaagaaattcatgtctttcttttgaatccatataatgttttgatagcgctatgaa |
8317115 |
T |
|
| Q |
112 |
ggacttagatctaaatgatctttttgaagatttagttttgttgtcataggttaccaggtagtt |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8317116 |
ggacttagatctaaatgatctttttgaagatttagttttgctgtcataggttaccaggtagtt |
8317178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 8317171 - 8317209
Alignment:
| Q |
206 |
aggtagtttagtagtcaggaaaaggtgcttaaaatttac |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8317171 |
aggtagtttagtagtcaggaaaaggtgcttaaaatttac |
8317209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 40638687 - 40638733
Alignment:
| Q |
119 |
gatctaaatgatctttttgaagatttagttttgttgtcataggttac |
165 |
Q |
| |
|
|||||||||||||| |||| |||||| |||||||||||||||||||| |
|
|
| T |
40638687 |
gatctaaatgatctgtttggagatttggttttgttgtcataggttac |
40638733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University