View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13132_low_4 (Length: 431)
Name: NF13132_low_4
Description: NF13132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13132_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 1018606 - 1018414
Alignment:
| Q |
3 |
ttaagaaccaacgtgttagatcaagggctgtgactgtgatctgggccacaaaatcaagttttgtgatgtttctgtgatcgcaacatgatcattattgagg |
102 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
1018606 |
ttaagaaccaatgtgttagattaagggctgtgactgtgatctgggccacaaaatcaaggtttgtgatgtttctgtgatcgcagcatgaccattattgagg |
1018507 |
T |
|
| Q |
103 |
tcgcagaaaccgcatttgaccgcaattctacgcaatagaaaggattgcgagacaactacgacaacagtttaaaaccttgttaggaacctatga |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1018506 |
tcgcagaaaccgcatttgaccgcaattctacgcaatagaaaggattgcgagacaactatgacaacagtttaaaaccttgttaggaacctatga |
1018414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 211 - 416
Target Start/End: Complemental strand, 1018425 - 1018220
Alignment:
| Q |
211 |
aggaacctatgattaggccttcaactttttagcacttttgaagaaaataaaaaggacagaaagtgcttagtgagggttaatagacgtttcttcaagagga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1018425 |
aggaacctatgattaggccttcaactttttagcacttttgaagaaagtaaaaaggacaaaaagtgcttagtgagggttaatagacgtttcttcaagagga |
1018326 |
T |
|
| Q |
311 |
gtgggggttggaaactctaccatccttatcttactatacttttttcattannnnnnnatnnnnnnnntgtagcttgtattctagcacctttttagcactc |
410 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
1018325 |
gtaggggttggaaactcttccatccttatcttactatacttttttcattatttttttataaaaaaaatgtagcttgtattctagcacctttttagcactc |
1018226 |
T |
|
| Q |
411 |
tgtttt |
416 |
Q |
| |
|
|||||| |
|
|
| T |
1018225 |
tgtttt |
1018220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 8317269 - 8317454
Alignment:
| Q |
1 |
tattaagaaccaacgtgttagatcaagggctgtgactgtgatctgggccacaaaatcaagttttgtgatgtttctgtgatcgcaacatgatcattattga |
100 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
8317269 |
tattaagaaccaatgtgttagattaagggctgtgactgtgatctgggctacaaaatcaaggtttgtgatgtttctgtgattgcaacatgaccattattga |
8317368 |
T |
|
| Q |
101 |
ggtcgcagaaaccgcatttgaccgcaattctacgcaatagaaaggattgcgagacaactacgacaacagtttaaaaccttgttaggaacctatga |
195 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8317369 |
ggt---------cgcatttgaccgcaattctacgcaatagaaaggattgcgagacaactacgacaacagtttaaaaccttgttaggagcctatga |
8317454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 211 - 281
Target Start/End: Original strand, 8317443 - 8317513
Alignment:
| Q |
211 |
aggaacctatgattaggccttcaactttttagcacttttgaagaaaataaaaaggacagaaagtgcttagt |
281 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
8317443 |
aggagcctatgattaggccttcaactttttagcacttttgaagaaaataaaaaggacaaaaagtgtttagt |
8317513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University