View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13132_low_6 (Length: 387)
Name: NF13132_low_6
Description: NF13132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13132_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 14 - 383
Target Start/End: Complemental strand, 24583007 - 24582621
Alignment:
| Q |
14 |
atatatacatatagaataccaaagattcatggaggtcgtacaatctctggctaatgcaatggaggaatgactcatctaagcatgaacaacgaggacaaag |
113 |
Q |
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| T |
24583007 |
atatatacatatagaataccaaagattcatggaggtcgtacaatctctggctaatgcaatggaggaatgactcatctaagcatgaacaacgaggacaaag |
24582908 |
T |
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| Q |
114 |
gccattcaaagcatggttccaatgattcaaaagagataaagtaggaattgagtcattacaagccatccaagtatgttcactc-nnnnnnnttgttgga-- |
210 |
Q |
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| T |
24582907 |
gccattcaaagcatggttccaatgattcaaaagagataaagtaggaattgagtcattacaagccatccaagtatgttcactcaaaaaaaattgttggata |
24582808 |
T |
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| Q |
211 |
--------------tatgtttgatttcaagagttaaaacttttggtcccgtgattgaaaagtaaatttattagacttaacgatctaatcgattaagttta |
296 |
Q |
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| T |
24582807 |
tgttcacaaaatattatgtttgatttcaagagttaaaacttttggtcccgtgattgaaaagtaaatttattagacttaacgatctaatcgattaagttta |
24582708 |
T |
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| Q |
297 |
actaaattgattaggtaatacgttctaattgattaattgataaatctgattatatttgaatgatgaatacttgtttgtggcctttgc |
383 |
Q |
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| T |
24582707 |
actaaattgattaggtaatacgttctaattgattaattgataaatctgattatatttgaatgatgaatacttgtttgtggcctttgc |
24582621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 182
Target Start/End: Original strand, 11417984 - 11418102
Alignment:
| Q |
64 |
ctaatgcaatggaggaatgactcatctaagcatgaacaacgaggacaaaggccattcaaagcatggttccaatgattcaaaagagataaagtaggaattg |
163 |
Q |
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| T |
11417984 |
ctaatgcaatgaaggaaggactcatcaaaggatgaacatcgaggacagaggccattaggggcttggttctgatgattcaaaagagatgtagtagggatag |
11418083 |
T |
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| Q |
164 |
agtcattacaagccatcca |
182 |
Q |
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| T |
11418084 |
aatcataacaagccatcca |
11418102 |
T |
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