View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13132_low_9 (Length: 353)
Name: NF13132_low_9
Description: NF13132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13132_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 338
Target Start/End: Complemental strand, 33389506 - 33389185
Alignment:
| Q |
14 |
aggggctgcatattattgcgttattacgtcaagctaatgtgttgctgaagtcattatcaacattaagaaaaatgtgtcattatcgatcaacattacatgc |
113 |
Q |
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| T |
33389506 |
aggggctgcatattattgcgttattacgtcaagctaatgtgttgctgaagtcattatcaacattaagaaaaataagtcattatcgatcaacattacatgc |
33389407 |
T |
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| Q |
114 |
tacgttattgtgtgaaccaataacatcattaattcacaaatcataagccatgtgtcaagttaacatcaatcaaatctggacaannnnnnnaaagaaaaaa |
213 |
Q |
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| T |
33389406 |
tacgttattgtgtgaacca--aacatcattaattcacaaatcataagccatgtgtcaagttaacatcaatcaaatctggacaattttttg-aagaaaaaa |
33389310 |
T |
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| Q |
214 |
taacaatactatatccatgaaattaaaacgagaaaaagaactacatatattaatctcttttcataacnnnnnnnngttttgggaatacctttatgaacta |
313 |
Q |
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| T |
33389309 |
taacaatactatatccatgaaattaaaacgagaaaaagaactacatatattaatctcttttcatgaactttttttgttttgggaatacctttatgaacta |
33389210 |
T |
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| Q |
314 |
catatgcatatatattgtacattgt |
338 |
Q |
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| T |
33389209 |
catatacatatatattgtacattgt |
33389185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 33393821 - 33393785
Alignment:
| Q |
34 |
ttattacgtcaagctaatgtgttgctgaagtcattat |
70 |
Q |
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| T |
33393821 |
ttattgcgtcaagctaatgggttgctgaagtcattat |
33393785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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