View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13133_high_1 (Length: 893)

Name: NF13133_high_1
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13133_high_1
NF13133_high_1
[»] chr5 (17 HSPs)
chr5 (18-888)||(41446106-41446977)
chr5 (378-883)||(41433387-41433889)
chr5 (112-342)||(41433938-41434168)
chr5 (258-340)||(31113391-31113473)
chr5 (258-340)||(5123500-5123582)
chr5 (265-338)||(36212960-36213033)
chr5 (258-340)||(10591984-10592066)
chr5 (19-72)||(41434185-41434238)
chr5 (685-761)||(34230717-34230793)
chr5 (685-761)||(34238772-34238848)
chr5 (269-340)||(18244652-18244723)
chr5 (252-330)||(18909313-18909391)
chr5 (268-340)||(22188000-22188070)
chr5 (685-848)||(42130750-42130913)
chr5 (268-339)||(29553606-29553677)
chr5 (782-853)||(41570028-41570099)
chr5 (299-340)||(2760304-2760345)
[»] chr1 (18 HSPs)
chr1 (258-332)||(24801438-24801512)
chr1 (272-340)||(15642526-15642594)
chr1 (267-328)||(32883561-32883622)
chr1 (252-340)||(7242809-7242897)
chr1 (269-341)||(22022188-22022260)
chr1 (268-340)||(42297444-42297516)
chr1 (296-340)||(49071672-49071716)
chr1 (269-340)||(9639559-9639630)
chr1 (265-328)||(13546490-13546553)
chr1 (271-358)||(12035620-12035703)
chr1 (268-346)||(33059722-33059800)
chr1 (272-338)||(44913180-44913246)
chr1 (268-341)||(33721007-33721080)
chr1 (268-341)||(36806678-36806751)
chr1 (272-340)||(10367575-10367643)
chr1 (268-340)||(16756149-16756221)
chr1 (268-339)||(9780992-9781063)
chr1 (252-331)||(40019292-40019370)
[»] chr8 (12 HSPs)
chr8 (268-341)||(36994501-36994574)
chr8 (258-340)||(4125026-4125108)
chr8 (269-340)||(7839255-7839326)
chr8 (258-340)||(2743990-2744072)
chr8 (269-335)||(16701386-16701452)
chr8 (258-340)||(30936061-30936143)
chr8 (268-337)||(12958090-12958159)
chr8 (268-340)||(19715727-19715800)
chr8 (268-340)||(13468747-13468819)
chr8 (292-340)||(24988590-24988638)
chr8 (268-330)||(44639050-44639112)
chr8 (285-338)||(13005682-13005735)
[»] chr3 (10 HSPs)
chr3 (252-340)||(40294663-40294751)
chr3 (269-335)||(25739155-25739221)
chr3 (268-340)||(30995967-30996039)
chr3 (267-340)||(1642672-1642745)
chr3 (267-340)||(27763787-27763860)
chr3 (269-330)||(15283139-15283200)
chr3 (268-341)||(25224766-25224839)
chr3 (268-341)||(38331195-38331268)
chr3 (268-339)||(20861315-20861386)
chr3 (298-340)||(8757441-8757483)
[»] chr4 (25 HSPs)
chr4 (269-340)||(33529325-33529396)
chr4 (258-340)||(31307068-31307150)
chr4 (269-341)||(16994158-16994230)
chr4 (268-340)||(35334100-35334172)
chr4 (268-340)||(38766156-38766228)
chr4 (268-331)||(3649057-3649120)
chr4 (268-331)||(17135163-17135226)
chr4 (258-340)||(9012327-9012409)
chr4 (268-341)||(13686668-13686742)
chr4 (179-341)||(45994500-45994662)
chr4 (258-340)||(51626308-51626390)
chr4 (268-340)||(14854672-14854744)
chr4 (268-340)||(35972410-35972482)
chr4 (268-331)||(8059037-8059100)
chr4 (268-331)||(47023469-47023532)
chr4 (271-330)||(53084963-53085022)
chr4 (268-346)||(24348742-24348820)
chr4 (257-331)||(28980665-28980739)
chr4 (268-333)||(28408554-28408619)
chr4 (268-340)||(2434626-2434698)
chr4 (257-341)||(7096152-7096236)
chr4 (252-340)||(13948594-13948682)
chr4 (268-318)||(3976641-3976691)
chr4 (258-340)||(46016206-46016288)
chr4 (271-332)||(34484258-34484318)
[»] scaffold0182 (1 HSPs)
scaffold0182 (258-340)||(26388-26470)
[»] chr2 (10 HSPs)
chr2 (179-341)||(5394375-5394536)
chr2 (685-761)||(12250433-12250509)
chr2 (269-340)||(17981566-17981636)
chr2 (184-340)||(7020362-7020516)
chr2 (268-331)||(2562356-2562419)
chr2 (252-333)||(38522903-38522984)
chr2 (269-340)||(17285739-17285810)
chr2 (282-341)||(26296440-26296499)
chr2 (258-340)||(42745118-42745200)
chr2 (282-331)||(32642994-32643043)
[»] chr7 (11 HSPs)
chr7 (267-340)||(1424639-1424712)
chr7 (266-330)||(7265325-7265389)
chr7 (258-340)||(29059862-29059944)
chr7 (258-340)||(31492160-31492242)
chr7 (268-344)||(4059691-4059767)
chr7 (268-340)||(20207564-20207636)
chr7 (268-339)||(21747043-21747114)
chr7 (267-340)||(19477252-19477324)
chr7 (269-330)||(33421523-33421584)
chr7 (297-347)||(24579449-24579499)
chr7 (267-340)||(11486746-11486819)
[»] chr6 (7 HSPs)
chr6 (268-331)||(29986815-29986878)
chr6 (268-341)||(21910272-21910344)
chr6 (267-340)||(31412188-31412261)
chr6 (268-339)||(21028845-21028914)
chr6 (268-339)||(21028982-21029051)
chr6 (268-340)||(12836899-12836971)
chr6 (268-341)||(28933205-28933278)
[»] scaffold0189 (1 HSPs)
scaffold0189 (265-338)||(11016-11089)


Alignment Details
Target: chr5 (Bit Score: 836; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 836; E-Value: 0
Query Start/End: Original strand, 18 - 888
Target Start/End: Complemental strand, 41446977 - 41446106
Alignment:
Q  18 atatgcaacaactttgtcaaatatagaaattattaagacttataatatattagtt-taatgtttatagattcattgaatatacatggtgtcctgattttg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41446977 atatgcaacaactttgtcaaatatagaaattattaagacttatgatatattagttgtaatgtttatagattcattgaatatacatggtgtcctgattttg 41446878  T
Q  117 acttttccatttcagaatttttggtccatttagtttatactttagagacgttgtgtgcacaataccaaagagcgtttatatgagattgcatgagtctctt 216  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41446877 acctttccatttcagaatttttggtccatttagtttatactttagagacgttgtgtgcacaataccaaagagcgtttatatgagattgcatgagtctctt 41446778  T
Q  217 ctagctcaaccaaaaacccggattcgaactcaagtttggatatgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagact 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41446777 ctagctcaaccaaaaacccggattcgaactcaagtttggatatgcagtaatgttaaaactcttacagagagtttaccgctcatttgggtcccacaagact 41446678  T
Q  317 cgagagattagtctccgcagttgcatgcacgtggatgatactttgtttacaccaaattcgatcccttgacattttggtaatgataaaatctggctatata 416  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41446677 cgagagattagtctccgctgttgcatgcacgtggatgatactttgtttataccaaattcgatcccttgacattttggtaatgataaaatctggctatata 41446578  T
Q  417 attatatattcatcatttgcaattccatgtgcactttctagcaaatagtaaacacttgagctcctccacaactagtctgatcatacatcatacatgggtt 516  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41446577 attatatattcatcatttgcaattccatgtgcactctctagcaaatagtaaacccttgagctcctccacaactagtctgatcatacatcatacatgggtt 41446478  T
Q  517 ggttgctaattctgtgtttgcagtttttcttgttgctcactcatgttatatcttcttctcattttatatgctgcctcgatgacagttcttccttgcttca 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41446477 ggttgctaattctgtgtttgcagtttttcttgttgctcactcatgttatatcttcttctcattttatatgctgcctcgatgacagttcttccttgcttca 41446378  T
Q  617 attcaaagcctctttcaacatagatactactgatactaattgtggtaaactagcttatgcagaggtatcaacatggcaaaatggtacagattgttgctca 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41446377 attcaaagcctctttcaacatagatactactgatactaattgtggtaaactagcttatgcagaggtatcaacatggcaaaatggtacagattgttgctca 41446278  T
Q  717 tggcttggtgtcacctgtgacacaatttctggtcacgtaattggcttagacctcagctgcaatgaccttcaaggtattattcatcccaacagtacacttt 816  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41446277 tggcttggtgtcacctgtgacacaatttctggtcacgtaattggcttagacctcagctgcaatgaccttcaaggtattattcatcccaacagtacacttt 41446178  T
Q  817 ttcatctttctcatctccaaacactcaaccttgctcataatagattattcccaactcaactttcatctcagt 888  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41446177 ttcatctttctcatctccaaacactcaaccttgctcataatagattattcccaactcaactttcatctcagt 41446106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 378 - 883
Target Start/End: Complemental strand, 41433889 - 41433387
Alignment:
Q  378 tcccttgacattttggtaatgataaaatctggctatataattatatattcatcatttgcaattccatgtgcactttctagcaaatagtaaacacttgagc 477  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||  |||    
T  41433889 tcccttgacattttggtaatgataaaatcttgctatataaatatatattcgtcatttgcaattccatgtgcactttctagcaaatagcaaacactaaagc 41433790  T
Q  478 tcctccacaactagtctgatcatacatcatacatgggttggttgctaattctgtgtttgcagtttttcttgttgctcactcatgttatatcttcttct-- 575  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    ||||||||||| ||||||||||      
T  41433789 tcctccacaactagtctgatcatacat-------gggttggttgctaattctgtgtttgcagtttttcttgtg---cactcatgttagatcttcttcttc 41433700  T
Q  576 -cattttatatgctgcctcgatgacagttcttccttgcttcaattcaaagcctctttcaacatagatactactgatactaattgtggtaaactagcttat 674  Q
     |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41433699 tcattttttatgccgcctcgatgacagttcttccttgcttcaattcaaagcctctttcaacatagatactactgatactaattgtggtaaactagcttat 41433600  T
Q  675 gcagaggtatcaacatggcaaaatggtacagattgttgctcatggcttggtgtc----acctgtgacacaatttctggtcacgtaattggcttagacctc 770  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||| |||||||||||||||||||||||||||||    
T  41433599 gcagaggtatcaacatggcaaaatggtacagattgttgctcatggcttggtgtttgttacctgtgacacagtttctggtcacgtaattggcttagacctc 41433500  T
Q  771 agctgcaatgaccttcaaggtattattcatcccaacagtacactttttcatctttctcatctccaaacactcaaccttgctcataatagattattcccaa 870  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41433499 agctgcaatggccttcaaggtatgattcatcccaacagtacactttttcatctttctcatctccaaacactcaaccttgctcataatagattattcccaa 41433400  T
Q  871 ctcaactttcatc 883  Q
    |||||||||||||    
T  41433399 ctcaactttcatc 41433387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 112 - 342
Target Start/End: Complemental strand, 41434168 - 41433938
Alignment:
Q  112 ttttgacttttccatttcagaatttttggtccatttagtttatactttagagacgttgtgtgcacaataccaaagagcgtttatatgagattgcatgagt 211  Q
    |||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41434168 ttttgacttttccatttcagaaatttgtgtccatttagtttatactttagagacgttgtgtgcacaataccaaggagcgtttatatgagattgcatgagt 41434069  T
Q  212 ctcttctagctcaaccaaaaacccggattcgaactcaagtttggatatgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccaca 311  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||| |||||||||    
T  41434068 ctcttctagctcaaccaaaaacccagattcgaactcaagtttggatatgcagtaacattaaaactcttacagagagtttaccgctcatttaggtcccaca 41433969  T
Q  312 agactcgagagattagtctccgcagttgcat 342  Q
    |||||||||||||||||||||||||||||||    
T  41433968 agactcgagagattagtctccgcagttgcat 41433938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 258 - 340
Target Start/End: Original strand, 31113391 - 31113473
Alignment:
Q  258 atgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||| | |||||||||||||| ||||||  |||||| ||||||| |||||||| ||||||| |||||||||||||||||||    
T  31113391 atgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgc 31113473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 258 - 340
Target Start/End: Complemental strand, 5123582 - 5123500
Alignment:
Q  258 atgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||| | |||||||||||||| ||||||  | |||| ||||||||||||||||  |||||| |||||||||||||||||||    
T  5123582 atgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgc 5123500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 265 - 338
Target Start/End: Original strand, 36212960 - 36213033
Alignment:
Q  265 aatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagtt 338  Q
    |||||||||||||||| ||||||||| |||| ||||| ||||||||||  |||||| |||| ||||||||||||    
T  36212960 aatgttaaaactcttagggagagtttgccgcccatttaggtcccacaatgctcgagggattggtctccgcagtt 36213033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 258 - 340
Target Start/End: Original strand, 10591984 - 10592066
Alignment:
Q  258 atgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||| | |||||||||||||| ||||||| | |||| |||||| |||||||||  |||||| |||||||||| ||||||||    
T  10591984 atgcagcagtgttaaaactcttagggagagtctgccgcccatttgagtcccacaatgctcgagggattagtctctgcagttgc 10592066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 41434238 - 41434185
Alignment:
Q  19 tatgcaacaactttgtcaaatatagaaattattaagacttataatatattagtt 72  Q
    ||||||||||||||||||||||||||||||||  |||||||| |||| ||||||    
T  41434238 tatgcaacaactttgtcaaatatagaaattatgtagacttatgatatgttagtt 41434185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 685 - 761
Target Start/End: Original strand, 34230717 - 34230793
Alignment:
Q  685 caacatggcaaaatggtacagattgttgctcatggcttggtgtcacctgtgacacaatttctggtcacgtaattggc 761  Q
    |||||||| ||||||| || ||||| |||||||||| ||||||||| ||||||||  | ||||||||||| ||||||    
T  34230717 caacatggaaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcacgtcattggc 34230793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 685 - 761
Target Start/End: Original strand, 34238772 - 34238848
Alignment:
Q  685 caacatggcaaaatggtacagattgttgctcatggcttggtgtcacctgtgacacaatttctggtcacgtaattggc 761  Q
    |||||||| ||||||| || ||||| |||||||||| ||||||||| ||||||||  | ||||||||||| ||||||    
T  34238772 caacatggaaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcacgtcattggc 34238848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 269 - 340
Target Start/End: Original strand, 18244652 - 18244723
Alignment:
Q  269 ttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||||||||  ||||| ||| || | ||||||||| |||||| ||| |||||||||||||||||||||||    
T  18244652 ttaaaactctttgggagatttttccacccatttgggttccacaatacttgagagattagtctccgcagttgc 18244723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 252 - 330
Target Start/End: Complemental strand, 18909391 - 18909313
Alignment:
Q  252 ttggatatgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtct 330  Q
    |||| ||||||| | |||||||||||||| ||||| ||| |||||||||||  ||||||||  |||||| |||||||||    
T  18909391 ttgggtatgcagcagtgttaaaactcttagggagaatttgccgctcatttgaatcccacaatgctcgagggattagtct 18909313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 22188070 - 22188000
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    ||||||||||||  ||||||| | ||||  ||||||||||||||| ||| ||| |||||||||||||||||||    
T  22188070 gttaaaactctt--ggagagtctgccgcctatttgggtcccacaatactagagggattagtctccgcagttgc 22188000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 685 - 848
Target Start/End: Complemental strand, 42130913 - 42130750
Alignment:
Q  685 caacatggcaaaatggtacagattgttgctcatggcttggtgtcacctgtgacacaatttctggtcacgtaattggcttagacctcagctgcaatgacct 784  Q
    |||||||| ||||||| || ||||| |||||||||  ||| ||||| ||||||||| | ||||||||||| |||| | |  ||||  ||||  | | |||    
T  42130913 caacatggaaaaatgggactgattgctgctcatggaatggcgtcacgtgtgacacagtctctggtcacgtgattgacctcaaccttggctgtgaaggcct 42130814  T
Q  785 tcaaggtattattc-atcccaacagtacactttttcatctttctcatctccaaacactcaacctt 848  Q
    |  |||||  |||| |||| || ||||| ||||||||||||  ||||||||||||||||||||||    
T  42130813 tacaggta-cattcaatcctaatagtaccctttttcatcttgttcatctccaaacactcaacctt 42130750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 268 - 339
Target Start/End: Original strand, 29553606 - 29553677
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttg 339  Q
    ||||||||||||| |||||||||  ||  ||||||||||||| ||  ||| ||||||||||||| |||||||    
T  29553606 gttaaaactcttagggagagtttgtcgtccatttgggtcccagaatgctcaagagattagtctctgcagttg 29553677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 782 - 853
Target Start/End: Original strand, 41570028 - 41570099
Alignment:
Q  782 ccttcaaggtattattcatcccaacagtacactttttcatctttctcatctccaaacactcaaccttgctca 853  Q
    |||||||||||  ||| |||| ||||  || |||||||||||| ||||||||||| ||||||||||| ||||    
T  41570028 ccttcaaggtaaaatttatcctaacaacactctttttcatcttgctcatctccaatcactcaacctttctca 41570099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 2760304 - 2760345
Alignment:
Q  299 tttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||| ||||||||||||||||| |||||||||| ||||||||    
T  2760304 tttgcgtcccacaagactcgagggattagtctctgcagttgc 2760345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 258 - 332
Target Start/End: Original strand, 24801438 - 24801512
Alignment:
Q  258 atgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctcc 332  Q
    |||||| | |||||||||||||| |||||||||||||  |||||| |||||||||||||| ||||||||||||||    
T  24801438 atgcagcactgttaaaactcttagggagagtttaccgtccatttgagtcccacaagactcaagagattagtctcc 24801512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 272 - 340
Target Start/End: Original strand, 15642526 - 15642594
Alignment:
Q  272 aaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    ||||||||| ||||||||| |||| ||||||||||||||||  |||||||||||| |||||||||||||    
T  15642526 aaactcttagggagagtttgccgcccatttgggtcccacaatgctcgagagattattctccgcagttgc 15642594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 267 - 328
Target Start/End: Complemental strand, 32883622 - 32883561
Alignment:
Q  267 tgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagt 328  Q
    |||||||||||||| ||||||||| |||| |||||||  ||||||||||||||| |||||||    
T  32883622 tgttaaaactcttagggagagtttgccgcccatttggaccccacaagactcgagggattagt 32883561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 7242897 - 7242809
Alignment:
Q  252 ttggatatgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    ||||| |||||| || ||||||||||||| ||||||| |||| | ||||||  || || || ||||||| |||||||||||||||||||    
T  7242897 ttggacatgcagcaacgttaaaactcttagggagagtctacctcccatttgaatctcataatactcgagggattagtctccgcagttgc 7242809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 22022188 - 22022260
Alignment:
Q  269 ttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgca 341  Q
    |||||||||||| |||||  || || | |||||||||||||||| | ||||| ||||||||||||||||||||    
T  22022188 ttaaaactcttagggagaacttgccacccatttgggtcccacaatattcgagggattagtctccgcagttgca 22022260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 42297516 - 42297444
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    ||||||||||||| ||||||| | |||  |||||||||| |||||  |||||| |||||||||||||||||||    
T  42297516 gttaaaactcttagggagagtctgccgtccatttgggtctcacaatgctcgagggattagtctccgcagttgc 42297444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 49071672 - 49071716
Alignment:
Q  296 tcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||||||||||||||  ||||||||||||||||||||||||||    
T  49071672 tcatttgggtcccacaatgctcgagagattagtctccgcagttgc 49071716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 269 - 340
Target Start/End: Complemental strand, 9639630 - 9639559
Alignment:
Q  269 ttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||||||||  ||| | | |||||| ||||||||||| | ||||||||||||||||||||||||| ||||    
T  9639630 ttaaaactctttgggaaaatataccgcccatttgggtcctaaaagactcgagagattagtctccgcaattgc 9639559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 265 - 328
Target Start/End: Original strand, 13546490 - 13546553
Alignment:
Q  265 aatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagt 328  Q
    |||||||||||||||| |||||||||||||| ||||||  |||||||| | | |||||||||||    
T  13546490 aatgttaaaactcttatggagagtttaccgcccatttgaatcccacaaaaattgagagattagt 13546553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 271 - 358
Target Start/End: Original strand, 12035620 - 12035703
Alignment:
Q  271 aaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgcatgcacgtggatgatact 358  Q
    |||||||||| ||||||| | |||| ||||||||||||||||  |||||| |||||||||| ||| |||||    |||||||||||||    
T  12035620 aaaactcttagggagagtctgccgcccatttgggtcccacaatgctcgagggattagtctcagcaattgca----cgtggatgatact 12035703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 33059800 - 33059722
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgcatgcac 346  Q
    ||||||||||||| ||||||||| |||| |||||||||||||||||  | |||  |||||||||  ||| |||||||||    
T  33059800 gttaaaactcttaaggagagtttgccgcccatttgggtcccacaaggtttgaggaattagtctctacagctgcatgcac 33059722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 272 - 338
Target Start/End: Original strand, 44913180 - 44913246
Alignment:
Q  272 aaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagtt 338  Q
    ||||||||| |||||| || |||| ||| ||||||||||||  ||||||||||||||||| ||||||    
T  44913180 aaactcttagggagagcttgccgcccatctgggtcccacaatgctcgagagattagtctctgcagtt 44913246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 33721007 - 33721080
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgca 341  Q
    |||||| |||||| ||||||||| |||  ||||||| |||||||||  ||||||||||||||| |||| |||||    
T  33721007 gttaaatctcttagggagagtttgccgtccatttggatcccacaaggttcgagagattagtcttcgcaattgca 33721080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 36806678 - 36806751
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgca 341  Q
    ||||||||||||| |||| || | |||| ||||||||| ||||||  |||||| |||||||||| |||||||||    
T  36806678 gttaaaactcttagggagtgtctgccgcccatttgggttccacaatgctcgagggattagtctctgcagttgca 36806751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 272 - 340
Target Start/End: Original strand, 10367575 - 10367643
Alignment:
Q  272 aaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    ||||||||| ||||||| |||||| ||||||||||| ||||  |||||  ||||| |||||||||||||    
T  10367575 aaactcttaaggagagtctaccgcccatttgggtccaacaatgctcgaaggattaatctccgcagttgc 10367643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 268 - 340
Target Start/End: Original strand, 16756149 - 16756221
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    ||||||||||||| ||||||  |  ||  ||||||||||||||||  |||||| |||||||||||||||||||    
T  16756149 gttaaaactcttagggagagcatgtcgtgcatttgggtcccacaatgctcgagggattagtctccgcagttgc 16756221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 9781063 - 9780992
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttg 339  Q
    ||||||||||||| |||||||   |||| ||||||||||||||||  |||||| ||||||| |||| |||||    
T  9781063 gttaaaactcttagggagagtcggccgcccatttgggtcccacaatgctcgagggattagtatccgtagttg 9780992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 331
Target Start/End: Original strand, 40019292 - 40019370
Alignment:
Q  252 ttggatatgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctc 331  Q
    |||||||||||| || ||||||||||||  |||||||||  | |||||||  ||||||||| |||| |||||||||||||    
T  40019292 ttggatatgcagcaacgttaaaactcttggggagagttt-gcactcatttaagtcccacaaaactcaagagattagtctc 40019370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 9e-17; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 36994574 - 36994501
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgca 341  Q
    ||||||||||||| ||||||||| | || ||||||||||||||||| |||||| |||||||||| |||||||||    
T  36994574 gttaaaactcttaaggagagtttgctgcccatttgggtcccacaaggctcgagggattagtctctgcagttgca 36994501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 258 - 340
Target Start/End: Complemental strand, 4125108 - 4125026
Alignment:
Q  258 atgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||| | |||||||||||||| ||||||  | |||| ||||||||||||||||  |||||| |||||||||||||||||||    
T  4125108 atgcagcactgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgc 4125026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 269 - 340
Target Start/End: Complemental strand, 7839326 - 7839255
Alignment:
Q  269 ttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||||||||| ||||||  | |||| ||||||||||||||||  |||||| |||||||||||||||||||    
T  7839326 ttaaaactcttagggagagcatgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgc 7839255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 258 - 340
Target Start/End: Original strand, 2743990 - 2744072
Alignment:
Q  258 atgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||| | |||||||||||||| ||||||  |  ||  ||||||||||||||||  |||||| |||||||||||||||||||    
T  2743990 atgcagcagtgttaaaactcttagggagagcatgtcgtccatttgggtcccacaatgctcgagggattagtctccgcagttgc 2744072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 269 - 335
Target Start/End: Complemental strand, 16701452 - 16701386
Alignment:
Q  269 ttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgca 335  Q
    ||||| |||||| |||||||||   || |||||| ||||||||||| ||||||||||||||||||||    
T  16701452 ttaaacctcttagggagagtttgtagcccatttgagtcccacaagattcgagagattagtctccgca 16701386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 258 - 340
Target Start/End: Original strand, 30936061 - 30936143
Alignment:
Q  258 atgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||| || ||||||||||||| ||||||  | |||| ||||||||||| ||||   ||||| |||||||||||||||||||    
T  30936061 atgcagcaacgttaaaactcttagggagagcctgccgcccatttgggtccgacaatgttcgagggattagtctccgcagttgc 30936143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 268 - 337
Target Start/End: Complemental strand, 12958159 - 12958090
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagt 337  Q
    ||||||||||||| ||||||  |  ||| ||||||||||||||||  |||||| ||||||||||||||||    
T  12958159 gttaaaactcttagggagagcctgtcgcccatttgggtcccacaatgctcgagggattagtctccgcagt 12958090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 19715800 - 19715727
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcga-gagattagtctccgcagttgc 340  Q
    ||||||||||| | |||||| || |||| ||||||||||||||||  ||||| | |||||||||||||||||||    
T  19715800 gttaaaactctcagggagagcttgccgcccatttgggtcccacaatgctcgaggggattagtctccgcagttgc 19715727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 13468819 - 13468747
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||||||||||  |||||| | |||| |||||| |||||||||  |||||  |||||||||||||||||||    
T  13468819 gttaaaactcttagagagagtctgccgcccatttgagtcccacaatgctcgaaggattagtctccgcagttgc 13468747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 24988590 - 24988638
Alignment:
Q  292 ccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    ||||||||||| ||||||||| ||||||| |||||||||||||| ||||    
T  24988590 ccgctcatttgagtcccacaatactcgagggattagtctccgcaattgc 24988638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 268 - 330
Target Start/End: Original strand, 44639050 - 44639112
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtct 330  Q
    ||||||||||||| ||||||||| |||| |||||| | ||||||| ||| | |||||||||||    
T  44639050 gttaaaactcttagggagagtttgccgcacatttgagccccacaatacttgggagattagtct 44639112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 13005735 - 13005682
Alignment:
Q  285 gagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagtt 338  Q
    ||||||||||  ||||| ||||||||||| ||| |||||| |||||||||||||    
T  13005735 gagtttaccgtccatttaggtcccacaaggctcaagagatcagtctccgcagtt 13005682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 4e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 40294663 - 40294751
Alignment:
Q  252 ttggatatgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||||||||  |||||||||||||||| ||| || || |||||||||||  |||||||| ||||||  |||||||||||||||||||    
T  40294663 ttggatatgcaacaatgttaaaactcttagggaaagcttgccgctcatttgaatcccacaatactcgaaggattagtctccgcagttgc 40294751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 269 - 335
Target Start/End: Original strand, 25739155 - 25739221
Alignment:
Q  269 ttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgca 335  Q
    |||||||||||| ||||||||| |||| ||||||||||||| ||||||||| | |||||||||||||    
T  25739155 ttaaaactcttagggagagttttccgcccatttgggtcccataagactcgataaattagtctccgca 25739221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 30996039 - 30995967
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    ||||||||||||| ||||||| | |||| ||| ||||||||||||  |||||| |||||||||||||||||||    
T  30996039 gttaaaactcttagggagagtctgccgcccatctgggtcccacaatgctcgagggattagtctccgcagttgc 30995967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 1642672 - 1642745
Alignment:
Q  267 tgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||||||| ||| ||||||| |||||  |||||||||||||||| ||| ||| ||||||| |||||||||||    
T  1642672 tgttaaaacttttagggagagtctaccgtccatttgggtcccacaatacttgagggattagtttccgcagttgc 1642745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 27763787 - 27763860
Alignment:
Q  267 tgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||||||||||| ||||||| | |||  |||||| |||||||||  |||||| |||||||||||||||||||    
T  27763787 tgttaaaactcttagggagagtctgccgtccatttgagtcccacaatgctcgagggattagtctccgcagttgc 27763860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 330
Target Start/End: Original strand, 15283139 - 15283200
Alignment:
Q  269 ttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtct 330  Q
    |||||||||||| ||| || || |||| ||||||||||||||||  ||||||||||||||||    
T  15283139 ttaaaactcttatggaaagattgccgcccatttgggtcccacaatgctcgagagattagtct 15283200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 25224766 - 25224839
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgca 341  Q
    ||||||||||||| |||||  || |||| ||||| ||||||||||  ||| || ||||||||||||||||||||    
T  25224766 gttaaaactcttaaggagaacttgccgcccatttaggtcccacaatgctcaagggattagtctccgcagttgca 25224839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 38331195 - 38331268
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgca 341  Q
    |||||||||||||  ||||| || |||| ||||||||||||||||   | ||| ||||||||||||||||||||    
T  38331195 gttaaaactcttagagagagcttgccgcccatttgggtcccacaatgtttgagggattagtctccgcagttgca 38331268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 268 - 339
Target Start/End: Original strand, 20861315 - 20861386
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttg 339  Q
    ||||||||||||| ||||||  | |||| ||||||||| ||| ||  |||||| ||||||||||||||||||    
T  20861315 gttaaaactcttagggagagcctgccgcccatttgggttccataatgctcgagggattagtctccgcagttg 20861386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 298 - 340
Target Start/End: Original strand, 8757441 - 8757483
Alignment:
Q  298 atttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||||||||||||  |||||| |||||||||||||||||||    
T  8757441 atttgggtcccacaatgctcgagggattagtctccgcagttgc 8757483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 269 - 340
Target Start/End: Original strand, 33529325 - 33529396
Alignment:
Q  269 ttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||||||||| |||||| || |||| |||||||||||||||| ||| ||| |||||||||||||||||||    
T  33529325 ttaaaactcttagggagagcttgccgcccatttgggtcccacaatactggagggattagtctccgcagttgc 33529396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 258 - 340
Target Start/End: Complemental strand, 31307150 - 31307068
Alignment:
Q  258 atgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||| | |||||||||||||| ||||||  | |||| ||||||||||||||||  |||||| |||||||||||||||||||    
T  31307150 atgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgc 31307068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 16994158 - 16994230
Alignment:
Q  269 ttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgca 341  Q
    |||||||||| | ||||||||| | || ||||| ||| |||||||||||||| ||||||||||||||||||||    
T  16994158 ttaaaactctaaaggagagtttgctgcccatttaggttccacaagactcgagtgattagtctccgcagttgca 16994230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 35334172 - 35334100
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||||||||||  ||||||   |||| |||||||||||||||| ||||||| |||||||||||||||||||    
T  35334172 gttaaaactcttagagagagtccgccgcccatttgggtcccacaatactcgagggattagtctccgcagttgc 35334100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 268 - 340
Target Start/End: Original strand, 38766156 - 38766228
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    ||||||||||||| ||||||| | |||| |||||||||| |||||  |||||| |||||||||||||||||||    
T  38766156 gttaaaactcttagggagagtctgccgcccatttgggtctcacaatgctcgagggattagtctccgcagttgc 38766228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 268 - 331
Target Start/End: Complemental strand, 3649120 - 3649057
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctc 331  Q
    ||||||||||||| ||||||||| |||||||||||| || ||||||||||||  ||||||||||    
T  3649120 gttaaaactcttagggagagttttccgctcatttggatcgcacaagactcgaaggattagtctc 3649057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 268 - 331
Target Start/End: Original strand, 17135163 - 17135226
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctc 331  Q
    ||||||||||||| ||||||||| |||| |||||| |||||| |||||||||| ||||||||||    
T  17135163 gttaaaactcttagggagagtttgccgcgcatttgagtcccagaagactcgagggattagtctc 17135226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 258 - 340
Target Start/End: Original strand, 9012327 - 9012409
Alignment:
Q  258 atgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||| | |||| ||||||||| |||||| || |||| || |||||||||||||  |||||| |||||||||||||||||||    
T  9012327 atgcagcagtgttcaaactcttagggagagcttgccgcccacttgggtcccacaatgctcgagggattagtctccgcagttgc 9012409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 13686668 - 13686742
Alignment:
Q  268 gttaaaactcttacgg-agagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgca 341  Q
    ||||||||||||| || ||||||| |||  |||||||||| |||||| |||||||||||||||||| ||||||||    
T  13686668 gttaaaactcttaagggagagtttgccgtccatttgggtctcacaaggctcgagagattagtctccacagttgca 13686742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 341
Target Start/End: Original strand, 45994500 - 45994662
Alignment:
Q  179 taccaaagagcgtttatatgagattgcatgagtctcttctagctcaaccaaaaacccggattcgaactcaagtttggatatgcagtaatgttaaaactct 278  Q
    |||| ||||||||||| ||||||| | |   ||||||||||||| ||||||   || |||||||||  ||   ||||  |||||  || |||||||||||    
T  45994500 tacccaagagcgtttagatgagatggaacaggtctcttctagcttaaccaaggtcctggattcgaatccagccttgggcatgcaacaacgttaaaactct 45994599  T
Q  279 tacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgca 341  Q
    || ||||||  |  ||| |||||||||| |||||  |||||||||||||||||||||||||||    
T  45994600 tagggagagcctgacgcccatttgggtctcacaatgctcgagagattagtctccgcagttgca 45994662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 258 - 340
Target Start/End: Complemental strand, 51626390 - 51626308
Alignment:
Q  258 atgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||| | |||||||||| ||| ||||||| | |||  |||||||||||||||   ||||||||||||||||||||||||||    
T  51626390 atgcagcagtgttaaaacttttagggagagtctgccgtccatttgggtcccacagtgctcgagagattagtctccgcagttgc 51626308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 268 - 340
Target Start/End: Original strand, 14854672 - 14854744
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    ||||||||||||| |||||| || |||| ||||||||||| ||||  |||||| |||||||||| ||||||||    
T  14854672 gttaaaactcttagggagagcttgccgcccatttgggtccaacaattctcgagggattagtctctgcagttgc 14854744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 268 - 340
Target Start/End: Original strand, 35972410 - 35972482
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    ||||||||| ||| ||||||||| |||| |||||||||||||| |   ||||| |||||||||||||||||||    
T  35972410 gttaaaactattagggagagtttgccgcccatttgggtcccactatgttcgagggattagtctccgcagttgc 35972482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 268 - 331
Target Start/End: Complemental strand, 8059100 - 8059037
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctc 331  Q
    |||||||||||||  ||||||| ||| | |||||||||||||||||||| ||| ||||||||||    
T  8059100 gttaaaactcttagagagagttgaccacccatttgggtcccacaagactggagtgattagtctc 8059037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 268 - 331
Target Start/End: Original strand, 47023469 - 47023532
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctc 331  Q
    ||||||||||||| |||||||||  ||  |||||||||||||||||||||||  ||||||||||    
T  47023469 gttaaaactcttagggagagtttgtcgtccatttgggtcccacaagactcgaaggattagtctc 47023532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 53085022 - 53084963
Alignment:
Q  271 aaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtct 330  Q
    |||||||||| ||||||||||||| | |||| ||||| |||| |||||||||||||||||    
T  53085022 aaaactcttagggagagtttaccgtttatttaggtccgacaaaactcgagagattagtct 53084963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 24348742 - 24348820
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgcatgcac 346  Q
    ||||||||| ||| ||||||||| |||  ||||||| ||||| |||| || |||||||||||||| |||||| ||||||    
T  24348742 gttaaaacttttaaggagagtttgccgtccatttggatcccataagagtcaagagattagtctccacagttgtatgcac 24348820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 257 - 331
Target Start/End: Original strand, 28980665 - 28980739
Alignment:
Q  257 tatgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctc 331  Q
    |||||||||  ||||||||||||| ||| |||||  | |||||||| |||||| |||||||||| ||||||||||    
T  28980665 tatgcagtagcgttaaaactcttaaggaaagtttgtcactcatttgagtcccataagactcgagcgattagtctc 28980739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 268 - 333
Target Start/End: Original strand, 28408554 - 28408619
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccg 333  Q
    ||||||| ||||| ||||||||| |||| ||||||| || |||||||||||||||| |||| ||||    
T  28408554 gttaaaattcttatggagagtttgccgcccatttggatctcacaagactcgagagaatagtttccg 28408619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 268 - 340
Target Start/End: Original strand, 2434626 - 2434698
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    ||||||||||||||| | |||||  ||||||||| ||||| ||||| |||||| |||| || |||||||||||    
T  2434626 gttaaaactcttacgaaaagtttgtcgctcatttaggtcctacaaggctcgagtgattggtatccgcagttgc 2434698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 257 - 341
Target Start/End: Original strand, 7096152 - 7096236
Alignment:
Q  257 tatgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgca 341  Q
    ||||||| || ||||||||||||| |||||| ||||||| ||||| ||||  ||||  ||| |||||||||||| | ||||||||    
T  7096152 tatgcagcaaagttaaaactcttagggagagcttaccgcccatttaggtcttacaatgctcaagagattagtctgcacagttgca 7096236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 13948682 - 13948594
Alignment:
Q  252 ttggatatgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||| ||||||| | |||||||||||||| ||||||| |||||  ||||||  || |||||  |||||| |||||||||| ||||||||    
T  13948682 ttgggtatgcagcagtgttaaaactcttagggagagtctaccgtccatttgaatctcacaatgctcgagggattagtctctgcagttgc 13948594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 268 - 318
Target Start/End: Original strand, 3976641 - 3976691
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcg 318  Q
    ||||||||| ||| ||||| |||||||| ||||||| ||||||||||||||    
T  3976641 gttaaaacttttagggagattttaccgcccatttggatcccacaagactcg 3976691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 258 - 340
Target Start/End: Original strand, 46016206 - 46016288
Alignment:
Q  258 atgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||| | |||||||||||||| ||||||  | |||| ||||||||||||||||  |||||   ||||||||||| ||||||    
T  46016206 atgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgaagaattagtctccgtagttgc 46016288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 332
Target Start/End: Complemental strand, 34484318 - 34484258
Alignment:
Q  271 aaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctcc 332  Q
    |||||||||| |||||||||||||  ||||||| || ||||| |||||||||| ||||||||    
T  34484318 aaaactcttaaggagagtttaccgtccatttggctcacacaa-actcgagagactagtctcc 34484258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 258 - 340
Target Start/End: Original strand, 26388 - 26470
Alignment:
Q  258 atgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||| | |||||||||||||| ||||||  | |||| ||||||||||||||||   |||||||||||||||||||||||||    
T  26388 atgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgttcgagagattagtctccgcagttgc 26470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 341
Target Start/End: Original strand, 5394375 - 5394536
Alignment:
Q  179 taccaaagagcgtttatatgagattgcatgagtctcttctagctcaaccaaaaacccggattcgaactcaagtttggatatgcagtaatgttaaaactct 278  Q
    |||||||||||| ||| ||||||| | | ||||||||||||||| ||||||   || || ||||||  ||   ||||  |||||| | ||||||||||||    
T  5394375 taccaaagagcgcttagatgagatggaacgagtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagca-tgttaaaactct 5394473  T
Q  279 tacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgca 341  Q
    || ||||||  | |||| ||||||||||||||||  |||| | ||||||||||||||||||||    
T  5394474 tagggagagcctgccgcccatttgggtcccacaatgctcgtgggattagtctccgcagttgca 5394536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 685 - 761
Target Start/End: Complemental strand, 12250509 - 12250433
Alignment:
Q  685 caacatggcaaaatggtacagattgttgctcatggcttggtgtcacctgtgacacaatttctggtcacgtaattggc 761  Q
    |||||||||||||||| || ||||| |||||||||| ||||||||| ||||||||||| | |||||| || ||||||    
T  12250509 caacatggcaaaatgggactgattgctgctcatggcatggtgtcacatgtgacacaatctatggtcatgtgattggc 12250433  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 269 - 340
Target Start/End: Original strand, 17981566 - 17981636
Alignment:
Q  269 ttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||||||||| |||||| || ||||  |||||||||||||||  ||||||||||||||||||||||||||    
T  17981566 ttaaaactcttagggagagcttgccgca-atttgggtcccacaatgctcgagagattagtctccgcagttgc 17981636  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 340
Target Start/End: Complemental strand, 7020516 - 7020362
Alignment:
Q  184 aagagcgtttatatgagattgcatgagtctcttctagctcaaccaaaaacccggattcgaactcaagtttggatatgcagtaatgttaaaactcttacgg 283  Q
    ||||||||||| ||||||||||| | ||||||||||||| ||||||   |  | ||||||| |||| ||| |  |||||| |||||||||| ||||| ||    
T  7020516 aagagcgtttagatgagattgcacgggtctcttctagcttaaccaaggtcttgaattcgaattcaa-tttaggcatgcagcaatgttaaaa-tcttaggg 7020419  T
Q  284 agagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||  || |||| ||||||||||| ||||  |||||| ||||||||||  |||||||    
T  7020418 agaacttgccgcccatttgggtcctacaatgctcgagtgattagtctcgacagttgc 7020362  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 268 - 331
Target Start/End: Complemental strand, 2562419 - 2562356
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctc 331  Q
    |||| |||||||| | |||||||  ||||||||||||||||||||||||| ||| |||||||||    
T  2562419 gttacaactcttatgaagagtttggcgctcatttgggtcccacaagactcaagaaattagtctc 2562356  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 252 - 333
Target Start/End: Original strand, 38522903 - 38522984
Alignment:
Q  252 ttggatatgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccg 333  Q
    ||||| |||||||| || ||||||||||  | |||||||||| | |||||| ||  ||||||||||||| ||||||||||||    
T  38522903 ttggacatgcagtagtgctaaaactcttcggaagagtttacctcacatttgagtgtcacaagactcgagtgattagtctccg 38522984  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 340
Target Start/End: Complemental strand, 17285810 - 17285739
Alignment:
Q  269 ttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||| |||||| ||||||||||||||||||| | ||| |||||| | ||  |||||||||| ||||||||    
T  17285810 ttaaaattcttacagagagtttaccgctcatttagatcctacaagatttgatggattagtctctgcagttgc 17285739  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 26296440 - 26296499
Alignment:
Q  282 ggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgca 341  Q
    ||||||||| |||| || |||  ||||||||| |||||||||||||||||| ||||||||    
T  26296440 ggagagtttgccgcccaattgaatcccacaaggctcgagagattagtctccacagttgca 26296499  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 258 - 340
Target Start/End: Complemental strand, 42745200 - 42745118
Alignment:
Q  258 atgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||| |||||||||||||||| ||||||| | | ||  |||||||| ||||||   ||||| |||||||||| ||||||||    
T  42745200 atgcagcaatgttaaaactcttagggagagtctgctgcctatttgggttccacaatggtcgagggattagtctcagcagttgc 42745118  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 32643043 - 32642994
Alignment:
Q  282 ggagagtttaccgctcatttgggtcccacaagactcgagagattagtctc 331  Q
    ||||||||| | | |||||||  |||||||||||||||||||||||||||    
T  32643043 ggagagtttgctgttcatttgaatcccacaagactcgagagattagtctc 32642994  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 1424639 - 1424712
Alignment:
Q  267 tgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||||||||||  ||||||| |   | ||||||||||||||||||||| |||||||||||||||||||||||    
T  1424639 tgttaaaactcttgaggagagtctcttgttcatttgggtcccacaagacttgagagattagtctccgcagttgc 1424712  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 266 - 330
Target Start/End: Complemental strand, 7265389 - 7265325
Alignment:
Q  266 atgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtct 330  Q
    ||||||||||||||| ||||||||| | ||||||||||||||||||| ||||||  |||||||||    
T  7265389 atgttaaaactcttagggagagtttgctgctcatttgggtcccacaatactcgaatgattagtct 7265325  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 258 - 340
Target Start/End: Original strand, 29059862 - 29059944
Alignment:
Q  258 atgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||| | |||||||||||||| ||||||  | |||| ||||||||||||||||  || ||| |||||||||||||||||||    
T  29059862 atgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgcttgagggattagtctccgcagttgc 29059944  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 258 - 340
Target Start/End: Original strand, 31492160 - 31492242
Alignment:
Q  258 atgcagtaatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||| | |||||||||||||| ||||||  | |||| ||||| ||||||||||  |||||| |||||||||||||||||||    
T  31492160 atgcagcagtgttaaaactcttagggagagcctgccgcccatttaggtcccacaatgctcgagggattagtctccgcagttgc 31492242  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 4059767 - 4059691
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgcatgc 344  Q
    |||||||||||||  |||||||| ||| | ||||||||| ||||||||||||| |||||||||  | ||||||||||    
T  4059767 gttaaaactcttagagagagttttccgtttatttgggtcacacaagactcgagggattagtctatgaagttgcatgc 4059691  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 268 - 340
Target Start/End: Original strand, 20207564 - 20207636
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    ||||||||||||| |||||| || |||| ||||||| ||| ||||  |||||| |||||||||||||||||||    
T  20207564 gttaaaactcttaaggagagcttgccgcgcatttggatcctacaatgctcgagggattagtctccgcagttgc 20207636  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 21747114 - 21747043
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttg 339  Q
    ||||||||||||| ||||||  |||| | ||||||||||||||||  |||||| ||||||||| ||||||||    
T  21747114 gttaaaactcttagggagagcctaccacccatttgggtcccacaatcctcgagggattagtcttcgcagttg 21747043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 19477324 - 19477252
Alignment:
Q  267 tgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||||||||||| |||||| || |||  ||||||||||||||||  || ||| |||||||||||||||||||    
T  19477324 tgttaaaactcttagggagagcttgccggccatttgggtcccacaatgct-gagggattagtctccgcagttgc 19477252  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 330
Target Start/End: Original strand, 33421523 - 33421584
Alignment:
Q  269 ttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtct 330  Q
    ||||||||||| |||||||||| |||  ||||||||||||||||||  ||| ||||||||||    
T  33421523 ttaaaactctttcggagagtttgccgtccatttgggtcccacaagatccgatagattagtct 33421584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 297 - 347
Target Start/End: Complemental strand, 24579499 - 24579449
Alignment:
Q  297 catttgggtcccacaagactcgagagattagtctccgcagttgcatgcacg 347  Q
    ||||||| ||| | ||||||||||||||||||||| |||||||||| ||||    
T  24579499 catttggatcctagaagactcgagagattagtctctgcagttgcatacacg 24579449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 11486819 - 11486746
Alignment:
Q  267 tgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||||||||||| | |||| || |||| ||||||||| ||||||  ||| |||||||||||||  |||||||    
T  11486819 tgttaaaactcttaagaagagcttgccgcccatttgggttccacaatgctcaagagattagtctctacagttgc 11486746  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 268 - 331
Target Start/End: Original strand, 29986815 - 29986878
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctc 331  Q
    ||||||||||||  ||||||||| ||||||||||| ||||||||| ||||||||||||| ||||    
T  29986815 gttaaaactctttaggagagtttgccgctcatttgagtcccacaaaactcgagagattaatctc 29986878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 21910272 - 21910344
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgca 341  Q
    |||||||||||||  |||||| | |||||||||| |||||||||| |||| || ||||||||||||||||||||    
T  21910272 gttaaaactcttagagagagtctgccgctcatttaggtcccacaatactc-agggattagtctccgcagttgca 21910344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 31412188 - 31412261
Alignment:
Q  267 tgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    |||||||||||||| ||||||| | |||| ||||||||| ||||||  ||||||| |||||||||| |||||||    
T  31412188 tgttaaaactcttagggagagtctgccgcccatttgggttccacaatgctcgagaaattagtctccacagttgc 31412261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 21028914 - 21028845
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttg 339  Q
    |||||||||||||  |||||||| |||| ||||||||| ||||||| ||| || ||||||||||||||||||    
T  21028914 gttaaaactctta--gagagtttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttg 21028845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 21029051 - 21028982
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttg 339  Q
    |||||||||||||  |||||||| |||| ||||||||| ||||||| ||| || ||||||||||||||||||    
T  21029051 gttaaaactctta--gagagtttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttg 21028982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 12836971 - 12836899
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgc 340  Q
    ||||||||||||| |||||| |  |||| ||||||||||||||||  || ||| ||||||||||| |||||||    
T  12836971 gttaaaactcttagggagagctcgccgcccatttgggtcccacaatgcttgagggattagtctccccagttgc 12836899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 28933205 - 28933278
Alignment:
Q  268 gttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagttgca 341  Q
    ||||||| |||||  |||||||| |||| ||||||||| ||||||  |||||| || |||| ||||||||||||    
T  28933205 gttaaaattcttagagagagtttgccgcccatttgggttccacaatgctcgagtgaatagtatccgcagttgca 28933278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 265 - 338
Target Start/End: Original strand, 11016 - 11089
Alignment:
Q  265 aatgttaaaactcttacggagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgcagtt 338  Q
    |||||||||||||||||||||||||| |||| ||||| |||  ||||| |||||| |||||| ||||| |||||    
T  11016 aatgttaaaactcttacggagagtttgccgcccatttaggtttcacaaaactcgatagattaatctccacagtt 11089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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