View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13133_high_10 (Length: 594)

Name: NF13133_high_10
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13133_high_10
NF13133_high_10
[»] chr4 (8 HSPs)
chr4 (20-556)||(37858050-37858587)
chr4 (367-444)||(42274291-42274368)
chr4 (367-444)||(49081258-49081334)
chr4 (172-233)||(48497414-48497474)
chr4 (389-444)||(1051820-1051875)
chr4 (247-293)||(11086344-11086390)
chr4 (357-442)||(36619874-36619958)
chr4 (144-228)||(41260064-41260147)
[»] chr3 (11 HSPs)
chr3 (367-442)||(39149167-39149242)
chr3 (357-442)||(34722998-34723082)
chr3 (367-442)||(34664297-34664372)
chr3 (141-233)||(9248367-9248458)
chr3 (154-233)||(44765329-44765407)
chr3 (357-444)||(32600682-32600768)
chr3 (141-233)||(47510713-47510804)
chr3 (389-444)||(37677385-37677440)
chr3 (154-233)||(3432592-3432669)
chr3 (357-444)||(32497777-32497863)
chr3 (170-233)||(54153865-54153927)
[»] chr2 (11 HSPs)
chr2 (357-442)||(28580371-28580455)
chr2 (379-477)||(32143612-32143710)
chr2 (154-227)||(31915107-31915179)
chr2 (357-444)||(33051183-33051270)
chr2 (157-233)||(35005203-35005278)
chr2 (154-233)||(12800763-12800841)
chr2 (367-442)||(15658834-15658909)
chr2 (170-228)||(8033331-8033388)
chr2 (409-443)||(34393939-34393973)
chr2 (367-436)||(2128183-2128252)
chr2 (369-442)||(25749704-25749777)
[»] chr8 (6 HSPs)
chr8 (357-476)||(8457496-8457614)
chr8 (357-442)||(34127694-34127778)
chr8 (357-442)||(41646466-41646549)
chr8 (367-444)||(30362850-30362927)
chr8 (154-233)||(29374568-29374646)
chr8 (367-442)||(7662261-7662337)
[»] chr7 (5 HSPs)
chr7 (384-442)||(30198353-30198411)
chr7 (375-472)||(22342310-22342407)
chr7 (172-233)||(22680724-22680784)
chr7 (164-233)||(40019529-40019596)
chr7 (177-233)||(23070275-23070330)
[»] chr5 (5 HSPs)
chr5 (154-233)||(1638032-1638109)
chr5 (357-444)||(5091816-5091902)
chr5 (367-444)||(9922905-9922982)
chr5 (165-233)||(30252009-30252076)
chr5 (390-442)||(41868808-41868860)
[»] chr6 (2 HSPs)
chr6 (388-442)||(29608484-29608538)
chr6 (367-442)||(19742088-19742163)
[»] chr1 (4 HSPs)
chr1 (367-444)||(6395497-6395574)
chr1 (173-233)||(15330845-15330904)
chr1 (392-444)||(19998568-19998620)
chr1 (367-439)||(43143252-43143324)
[»] scaffold0007 (1 HSPs)
scaffold0007 (198-230)||(246572-246604)


Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 20 - 556
Target Start/End: Original strand, 37858050 - 37858587
Alignment:
Q  20 aatttttactttataatgtagatgttattttatttttaacaatactatcgtagatgctcttctcttttataaatattgtggatgctcctggctactctat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||    
T  37858050 aatttttactttataatgtagatgttattttatttttaacaatactatcgtagatgctcttcttttttataaatattgtggat-ctcttggctactctat 37858148  T
Q  120 caagtatcaaccattatattgataaggaaaacgataaccattatctttgaggcattgattaaagtattataaataaagaagtttgcatcgaaaagtggtt 219  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| |||||||| ||||||||| |||||||||||||||||||| ||    
T  37858149 caagtatcaaccattatatttataaggaaaacgataatcattatctttggggcattggttaaagtactataaataaggaagtttgcatcgaaaagtgatt 37858248  T
Q  220 taattattgctaagnnnnnnnnnnnnntttgtatttctaagataaagtttctattaatcaaatcgttaa-ccattaatctaattatttggttaagtaaaa 318  Q
    ||||||||||||||              ||||||||  |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  37858249 taattattgctaagaaaaaagtaaaaacttgtattttcaagataaagtttctattaatcaaatccttaacccattaatctaattatttggttaagtaaaa 37858348  T
Q  319 tttatcttataaaaatgagttttgttaaccagtgcccctaagaaactaaaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaact 418  Q
     |||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37858349 cttatcttataaaaatgggtcttgttaaccagtgcctctaagaaactaaaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaact 37858448  T
Q  419 tttataaaatagaatacacaattttc-nnnnnnntattttattttctaattccttaatcggtgctccggaagtaatagtatacccaatttaatannnnnn 517  Q
    |||||||||||||||||||||||| |        ||||| ||||||||||||||||| || | ||  ||||||  |||||||||||||||||||          
T  37858449 tttataaaatagaatacacaatttccaaaaaaaatatttcattttctaattccttaaccgatactgtggaagtgctagtatacccaatttaatatttttt 37858548  T
Q  518 naagaaagcgttgggttaattcatcatgggtattctgtg 556  Q
     ||||||||||||||||||||||||||||||||||||||    
T  37858549 taagaaagcgttgggttaattcatcatgggtattctgtg 37858587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 367 - 444
Target Start/End: Original strand, 42274291 - 42274368
Alignment:
Q  367 aaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattttc 444  Q
    |||||||||||||||| ||| ||||| |||| ||||||  |||||||||||||||| ||||||||| |||||||||||    
T  42274291 aaaagtagaaagaaaagacaagatttacattaaaaagagaaatatttcaacttttaaaaaatagaacacacaattttc 42274368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 367 - 444
Target Start/End: Original strand, 49081258 - 49081334
Alignment:
Q  367 aaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattttc 444  Q
    ||||||||||||||||  |||||||| |||||||||||  ||||||| |||||||| |||||||||||||||||||||    
T  49081258 aaaagtagaaagaaaag-catgatttacattgaaaagagcaatattttaacttttaaaaaatagaatacacaattttc 49081334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 48497414 - 48497474
Alignment:
Q  172 cattgattaaagtattataaataaagaagtttgcatcgaaaagtggtttaattattgctaag 233  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||| |||| |||| ||||    
T  48497414 cattgattaaagtatta-aaataaataagtttgtatcgaaaagtggtataatcattgataag 48497474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 444
Target Start/End: Complemental strand, 1051875 - 1051820
Alignment:
Q  389 atttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattttc 444  Q
    ||||||||||||||||  ||| ||| |||||||| || ||||||||||||||||||    
T  1051875 atttgcattgaaaagagcaattttttaacttttaaaacatagaatacacaattttc 1051820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 293
Target Start/End: Original strand, 11086344 - 11086390
Alignment:
Q  247 tttgtatttctaagataaagtttctattaatcaaatcgttaaccatt 293  Q
    |||||||||| ||||||||||| |||||||| ||||| |||||||||    
T  11086344 tttgtatttccaagataaagttcctattaatgaaatccttaaccatt 11086390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 442
Target Start/End: Original strand, 36619874 - 36619958
Alignment:
Q  357 taagaaactaaaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattt 442  Q
    |||||||||||||| |||||||||||  ||   ||| |||||||||||| | ||||| |||||||| ||| || ||||||||||||    
T  36619874 taagaaactaaaaa-tagaaagaaaagtcaaattttacattgaaaagaacactatttaaacttttaaaaagtaaaatacacaattt 36619958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 41260147 - 41260064
Alignment:
Q  144 aggaaaacgataaccattatctttgaggcattgattaaagtattataaataaagaagtttgcatcgaaaagtggtttaattattg 228  Q
    ||||||| | |||||||| || |||  |||| | ||||||||||| ||||||  ||||||||||||||||||||| |||| ||||    
T  41260147 aggaaaatgttaaccattgtccttggtgcatcggttaaagtatta-aaataagtaagtttgcatcgaaaagtggtgtaatcattg 41260064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 367 - 442
Target Start/End: Complemental strand, 39149242 - 39149167
Alignment:
Q  367 aaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattt 442  Q
    |||||||||||||||| | ||||||||||||||||| || |||||||||||||||| |||||||||||||||||||    
T  39149242 aaaagtagaaagaaaagatatgatttgcattgaaaataacaatatttcaacttttaaaaaatagaatacacaattt 39149167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 357 - 442
Target Start/End: Original strand, 34722998 - 34723082
Alignment:
Q  357 taagaaactaaaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattt 442  Q
    ||||||||||||| ||  |||||||| |||||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||||    
T  34722998 taagaaactaaaa-gtgaaaagaaaagacatgatttgcattaaaaagagtaatagttcaacttttaaaaaatagaatacacaattt 34723082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 367 - 442
Target Start/End: Complemental strand, 34664372 - 34664297
Alignment:
Q  367 aaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattt 442  Q
    ||||||| |||||||||||||| ||||||||||||||| | || |||||||||||| ||||||||||||| |||||    
T  34664372 aaaagtaaaaagaaaatacatgttttgcattgaaaagagtcatttttcaacttttaaaaaatagaatacataattt 34664297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 141 - 233
Target Start/End: Original strand, 9248367 - 9248458
Alignment:
Q  141 ataaggaaaacgataaccattatctttgaggcattgattaaagtattataaataaagaagtttgcatcgaaaagtggtttaattattgctaag 233  Q
    |||| ||||| | ||||||||| ||||| ||||||| ||||||||||| ||||||| ||||||||||||||||||||| |||| |||| ||||    
T  9248367 ataaagaaaatgctaaccattacctttggggcattggttaaagtatta-aaataaataagtttgcatcgaaaagtggtataatcattgataag 9248458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 44765407 - 44765329
Alignment:
Q  154 taaccattatctttgaggcattgattaaagtattataaataaagaagtttgcatcgaaaagtggtttaattattgctaag 233  Q
    |||||||||| |||| || |||||||||||||||| ||||||  |||||||||| |||||||||| ||||||||||||||    
T  44765407 taaccattatttttggggtattgattaaagtatta-aaataagtaagtttgcattgaaaagtggtgtaattattgctaag 44765329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 444
Target Start/End: Complemental strand, 32600768 - 32600682
Alignment:
Q  357 taagaaactaaaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattttc 444  Q
    ||||||||||||| || ||| ||||| | |||||||| ||||||||||  |||| ||||||||||| || ||||||||||||||||||    
T  32600768 taagaaactaaaa-gtggaatgaaaagaaatgatttgtattgaaaagagcaataattcaacttttaaaatatagaatacacaattttc 32600682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 233
Target Start/End: Original strand, 47510713 - 47510804
Alignment:
Q  141 ataaggaaaacgataaccattatctttgaggcattgattaaagtattataaataaagaagtttgcatcgaaaagtggtttaattattgctaag 233  Q
    ||||||| || | ||||||||| ||||| |||||||||||||||| || ||||||  ||||||| |||||||| |||| ||||||||| ||||    
T  47510713 ataaggagaatgctaaccattacctttggggcattgattaaagtacta-aaataagtaagtttgtatcgaaaaatggtgtaattattgttaag 47510804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 389 - 444
Target Start/End: Complemental strand, 37677440 - 37677385
Alignment:
Q  389 atttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattttc 444  Q
    |||| |||||| ||||  |||||||||||||||| |||||||||||||||||||||    
T  37677440 atttacattgacaagagcaatatttcaacttttaaaaaatagaatacacaattttc 37677385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 233
Target Start/End: Original strand, 3432592 - 3432669
Alignment:
Q  154 taaccattatctttgaggcattgattaaagtattataaataaagaagtttgcatcgaaaagtggtttaattattgctaag 233  Q
    ||||||||||||| |||| |||| |||||||| || ||||||| ||||||||||| |||| || | ||||||||||||||    
T  3432592 taaccattatctt-gaggtattggttaaagtacta-aaataaataagtttgcatcaaaaaatgatgtaattattgctaag 3432669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 444
Target Start/End: Original strand, 32497777 - 32497863
Alignment:
Q  357 taagaaactaaaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattttc 444  Q
    |||||||||||||| | |||||||||||||  |||||||||||||| || | | ||| |||||| | ||| || ||||||||||||||    
T  32497777 taagaaactaaaaa-tggaaagaaaatacaaaatttgcattgaaaataacattttttaaactttcaaaaagtataatacacaattttc 32497863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 54153865 - 54153927
Alignment:
Q  170 ggcattgattaaagtattataaataaagaagtttgcatcgaaaagtggtttaattattgctaag 233  Q
    ||||||| |||||||| || ||||||  |||||||||||||||||||||||||| |||| ||||    
T  54153865 ggcattggttaaagtacta-aaataagtaagtttgcatcgaaaagtggtttaatcattgataag 54153927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 357 - 442
Target Start/End: Original strand, 28580371 - 28580455
Alignment:
Q  357 taagaaactaaaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattt 442  Q
    ||||||||||||  ||||||||||||||||| ||||| |||||||||| |||| |||||||||||| |||||| ||||||||||||    
T  28580371 taagaaactaaag-gtagaaagaaaatacataatttgtattgaaaagagtaatttttcaacttttaaaaaataaaatacacaattt 28580455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 379 - 477
Target Start/End: Complemental strand, 32143710 - 32143612
Alignment:
Q  379 aaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattttcnnnnnnntattttattttctaattccttaatcg 477  Q
    |||| ||||||||| ||||||||| || |||||||||||||||| |||||||||||||||||||||       |||||| ||||||||||| |||||||    
T  32143710 aaaaaacatgatttacattgaaaataacaatatttcaacttttaaaaaatagaatacacaattttcaagaaaatattttcttttctaattctttaatcg 32143612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 31915179 - 31915107
Alignment:
Q  154 taaccattatctttgaggcattgattaaagtattataaataaagaagtttgcatcgaaaagtggtttaattatt 227  Q
    |||||||| || ||| ||||||| ||||||||||| ||||||  ||||||||||||||||||||| ||||||||    
T  31915179 taaccattgtccttggggcattggttaaagtatta-aaataagtaagtttgcatcgaaaagtggtgtaattatt 31915107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 444
Target Start/End: Original strand, 33051183 - 33051270
Alignment:
Q  357 taagaaactaaaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaactt-ttataaaatagaatacacaattttc 444  Q
    ||||||||||||| | | |||||||| | |||||||| ||||||||||| |||||||||||||   | |||||||||||||||||||||    
T  33051183 taagaaactaaaatgga-aaagaaaagatatgatttgtattgaaaagaacaatatttcaacttaaaaaaaaatagaatacacaattttc 33051270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 35005203 - 35005278
Alignment:
Q  157 ccattatctttgaggcattgattaaagtattataaataaagaagtttgcatcgaaaagtggtttaattattgctaag 233  Q
    |||||| | ||| ||||||| |||||||| || ||||||  ||||||||||||||||||||| |||| |||||||||    
T  35005203 ccattacccttggggcattggttaaagtacta-aaataagtaagtttgcatcgaaaagtggtgtaatcattgctaag 35005278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 233
Target Start/End: Original strand, 12800763 - 12800841
Alignment:
Q  154 taaccattatctttgaggcattgattaaagtattataaataaagaagtttgcatcgaaaagtggtttaattattgctaag 233  Q
    ||||||||| ||||||||||||| ||||||||||| | ||||  || |||| |||||||| |||| ||||||||| ||||    
T  12800763 taaccattacctttgaggcattggttaaagtatta-agataagtaaatttgtatcgaaaattggtctaattattgttaag 12800841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 442
Target Start/End: Complemental strand, 15658909 - 15658834
Alignment:
Q  367 aaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattt 442  Q
    |||||||||||||||| | || ||||||||| ||||||  ||  ||| |||||||| || ||||||||||||||||    
T  15658909 aaaagtagaaagaaaaaatataatttgcattcaaaagagcaactttttaacttttaaaacatagaatacacaattt 15658834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 8033388 - 8033331
Alignment:
Q  170 ggcattgattaaagtattataaataaagaagtttgcatcgaaaagtggtttaattattg 228  Q
    ||||||| ||||||||||| ||||||  || |||||||||||||||||| |||||||||    
T  8033388 ggcattggttaaagtatta-aaataagtaaatttgcatcgaaaagtggtgtaattattg 8033331  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 443
Target Start/End: Original strand, 34393939 - 34393973
Alignment:
Q  409 tatttcaacttttataaaatagaatacacaatttt 443  Q
    |||||||||||||| ||||||||||||||||||||    
T  34393939 tatttcaacttttaaaaaatagaatacacaatttt 34393973  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 436
Target Start/End: Original strand, 2128183 - 2128252
Alignment:
Q  367 aaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaataca 436  Q
    ||||||||||| | || ||||||||| ||||||||  |  |||||||||||||||| |||| ||||||||    
T  2128183 aaaagtagaaatagaacacatgatttacattgaaaccagcaatatttcaacttttaaaaaagagaataca 2128252  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 442
Target Start/End: Complemental strand, 25749777 - 25749704
Alignment:
Q  369 aagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattt 442  Q
    ||||||||||||||   | | |||||||||||||||| | | ||| |||||| | |||||||||||||||||||    
T  25749777 aagtagaaagaaaagtaaagttttgcattgaaaagaacacttttttaactttcaaaaaatagaatacacaattt 25749704  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 357 - 476
Target Start/End: Original strand, 8457496 - 8457614
Alignment:
Q  357 taagaaactaaaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattttcnnnnnnntattt 456  Q
    ||||||||||| | ||||||| |||| ||||||||| |||||||||||  || ||||||||||||| ||||||||||||||||||| |       |||||    
T  8457496 taagaaactaata-gtagaaataaaagacatgatttacattgaaaagagcaacatttcaacttttaaaaaatagaatacacaatttccaagaaaatattt 8457594  T
Q  457 tattttctaattccttaatc 476  Q
      ||||||||||||||||||    
T  8457595 ccttttctaattccttaatc 8457614  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 357 - 442
Target Start/End: Complemental strand, 34127778 - 34127694
Alignment:
Q  357 taagaaactaaaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattt 442  Q
    ||||||||||||| || |||||||||  |||||||| |||||||||||  ||||||| |||||||| |||||||||||||||||||    
T  34127778 taagaaactaaaa-gtggaaagaaaaggcatgatttacattgaaaagagcaatattttaacttttaaaaaatagaatacacaattt 34127694  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 357 - 442
Target Start/End: Complemental strand, 41646549 - 41646466
Alignment:
Q  357 taagaaactaaaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattt 442  Q
    ||||||||||||| || |||| |||| | ||||||||||||||||| | |||||||| |||||||| |||||||||||||||||||    
T  41646549 taagaaactaaaa-gtggaaataaaagatatgatttgcattgaaaa-agtaatattttaacttttaaaaaatagaatacacaattt 41646466  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 367 - 444
Target Start/End: Complemental strand, 30362927 - 30362850
Alignment:
Q  367 aaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattttc 444  Q
    ||||||||||| |||| || ||||||  ||||||||||  |||||||||||||||  |||||| ||||||||||||||    
T  30362927 aaaagtagaaataaaagacgtgatttatattgaaaagagcaatatttcaactttttaaaaataaaatacacaattttc 30362850  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 29374646 - 29374568
Alignment:
Q  154 taaccattatctttgaggcattgattaaagtattataaataaagaagtttgcatcgaaaagtggtttaattattgctaag 233  Q
    ||||||||||| ||||| ||||| |||||||| || ||||||  || ||| |||||||||||||| ||||||||||||||    
T  29374646 taaccattatccttgagacattggttaaagtagta-aaataagtaaatttacatcgaaaagtggtgtaattattgctaag 29374568  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 442
Target Start/End: Original strand, 7662261 - 7662337
Alignment:
Q  367 aaaagtagaaagaaaatac-atgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattt 442  Q
    |||||||||||||||| |  || |||||||||||||| || ||| ||  |||||||| || ||||||||||||||||    
T  7662261 aaaagtagaaagaaaaaaatataatttgcattgaaaaaaacaattttctaacttttaaaatatagaatacacaattt 7662337  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 384 - 442
Target Start/End: Complemental strand, 30198411 - 30198353
Alignment:
Q  384 acatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattt 442  Q
    |||||||| ||||||||||  | |||||||||||||||| |||||||||||||||||||    
T  30198411 acatgattcgcattgaaaatgacaatatttcaacttttaaaaaatagaatacacaattt 30198353  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 472
Target Start/End: Complemental strand, 22342407 - 22342310
Alignment:
Q  375 aaagaaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattttcnnnnnnntattttattttctaattcctt 472  Q
    |||||||| | ||||||| ||||||||| || | |||||||||||||| || |||||||| |||||||||       |||||| ||||||||||||||    
T  22342407 aaagaaaagatatgatttacattgaaaataacactatttcaacttttaaaacatagaatagacaattttcatgaaaatattttcttttctaattcctt 22342310  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 22680724 - 22680784
Alignment:
Q  172 cattgattaaagtattataaataaagaagtttgcatcgaaaagtggtttaattattgctaag 233  Q
    ||||| |||||||| | |||||||  ||||||||||||||||||||| |||| |||||||||    
T  22680724 cattggttaaagtact-taaataagtaagtttgcatcgaaaagtggtgtaatgattgctaag 22680784  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 40019596 - 40019529
Alignment:
Q  164 ctttgaggcattgattaaagtattataaataaagaagtttgcatcgaaaagtggtttaattattgctaag 233  Q
    ||||| ||||||| ||||||||||| ||||||| |||||||||| |||||||| | | ||||||||||||    
T  40019596 ctttggggcattggttaaagtatta-aaataaataagtttgcattgaaaagtgatgt-attattgctaag 40019529  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 23070330 - 23070275
Alignment:
Q  177 attaaagtattataaataaagaagtttgcatcgaaaagtggtttaattattgctaag 233  Q
    |||||||||||| ||||||  || |||||||||||||||||| |||| |||||||||    
T  23070330 attaaagtatta-aaataagtaaatttgcatcgaaaagtggtgtaatcattgctaag 23070275  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 1638109 - 1638032
Alignment:
Q  154 taaccattatctttgaggcattgattaaagtattataaataaagaagtttgcatcgaaaagtggtttaattattgctaag 233  Q
    |||||||| |||||| |||||||||||||| | || ||||||| ||||||||||| |||||| || ||||||||||||||    
T  1638109 taaccattgtctttg-ggcattgattaaagaacta-aaataaataagtttgcatcaaaaagttgtgtaattattgctaag 1638032  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 444
Target Start/End: Complemental strand, 5091902 - 5091816
Alignment:
Q  357 taagaaactaaaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattttc 444  Q
    ||||||||||||| |||||||||||| ||| ||||||  |||||||||  | | |||||||||| | ||| || ||||||||||||||    
T  5091902 taagaaactaaaa-gtagaaagaaaagacaagatttgttttgaaaagagcactttttcaactttcaaaaagtataatacacaattttc 5091816  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 444
Target Start/End: Original strand, 9922905 - 9922982
Alignment:
Q  367 aaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattttc 444  Q
    |||||||||||||||| | || ||||| ||||||||||  ||  ||| |||||||| || ||| ||||||||||||||    
T  9922905 aaaagtagaaagaaaaaatataatttgaattgaaaagagcaactttttaacttttaaaacatataatacacaattttc 9922982  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 30252076 - 30252009
Alignment:
Q  165 tttgaggcattgattaaagtattataaataaagaagtttgcatcgaaaagtggtttaattattgctaag 233  Q
    ||||||| |||| |||||||| || ||||||| |  |||| ||||||||||||| ||||||||||||||    
T  30252076 tttgaggtattggttaaagtacta-aaataaatatatttgtatcgaaaagtggtgtaattattgctaag 30252009  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 442
Target Start/End: Original strand, 41868808 - 41868860
Alignment:
Q  390 tttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattt 442  Q
    |||||||| |||||||||||  ||||||||||| ||| || ||||||||||||    
T  41868808 tttgcattaaaaagaataattcttcaacttttaaaaagtaaaatacacaattt 41868860  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 442
Target Start/End: Complemental strand, 29608538 - 29608484
Alignment:
Q  388 gatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattt 442  Q
    ||||| |||||||||||| ||||||| |||||||| ||||||||||||| |||||    
T  29608538 gatttacattgaaaagaacaatattttaacttttaaaaaatagaatacataattt 29608484  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 442
Target Start/End: Original strand, 19742088 - 19742163
Alignment:
Q  367 aaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattt 442  Q
    ||||||||||| ||||  |||||||| |||||||||||  ||||||||||  |||| || ||||||||| ||||||    
T  19742088 aaaagtagaaataaaaggcatgatttacattgaaaagagcaatatttcaaactttaaaagatagaatactcaattt 19742163  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 367 - 444
Target Start/End: Complemental strand, 6395574 - 6395497
Alignment:
Q  367 aaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattttc 444  Q
    ||||||| |||||||| | || ||||||||||||||||| ||  ||| |||||||| || ||| ||||||||||||||    
T  6395574 aaaagtaaaaagaaaaaatataatttgcattgaaaagaacaactttttaacttttaaaacataaaatacacaattttc 6395497  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 15330845 - 15330904
Alignment:
Q  173 attgattaaagtattataaataaagaagtttgcatcgaaaagtggtttaattattgctaag 233  Q
    ||||| |||||||||| ||||||  |||||||||||||||| | || ||||||||||||||    
T  15330845 attgactaaagtatta-aaataagaaagtttgcatcgaaaaattgtgtaattattgctaag 15330904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 19998568 - 19998620
Alignment:
Q  392 tgcattgaaaagaataatatttcaacttttataaaatagaatacacaattttc 444  Q
    |||||||||||| | ||| ||| |||||||| || ||||||||||||||||||    
T  19998568 tgcattgaaaagtacaattttttaacttttaaaatatagaatacacaattttc 19998620  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 439
Target Start/End: Complemental strand, 43143324 - 43143252
Alignment:
Q  367 aaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaa 439  Q
    |||||||||||||||||||| |||||  |||||||| || | | |||||||||| | ||| || |||||||||    
T  43143324 aaaagtagaaagaaaatacaagatttatattgaaaataacattttttcaactttcaaaaagtataatacacaa 43143252  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 246604 - 246572
Alignment:
Q  198 aagtttgcatcgaaaagtggtttaattattgct 230  Q
    ||||||||||||||||||||| |||||||||||    
T  246604 aagtttgcatcgaaaagtggtgtaattattgct 246572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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