View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_high_11 (Length: 583)
Name: NF13133_high_11
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_high_11 |
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| [»] scaffold1463 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 500; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 12 - 564
Target Start/End: Complemental strand, 48062235 - 48061683
Alignment:
| Q |
12 |
aacctgtgtagatcctcagccaaatcaggtatgttcaaccttcaaaagtaatataataaacttcttctcttcaagaaaatttgttatttataaattctgc |
111 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48062235 |
aaccagtgtggatcctcagccaaatcaggtatgttcaaccttcaaaagtaatataataaacttcttctcttcaagaaaatttgttatttataaattctgc |
48062136 |
T |
|
| Q |
112 |
ttatcacactagtcaaaatacaatgcttcgtgatttaagaccaaagatggatagtttatctatctgttttcatctgtttgcnnnnnnngtaaacaatata |
211 |
Q |
| |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48062135 |
ttattacactagttaaaatacaatgcttcgtgatttaagaccaaagatggatagtttatctatctgttttcatctgtttgcaaaaaaagtaaacaatata |
48062036 |
T |
|
| Q |
212 |
tgacaggtttcattcacattacagttacaagccacattccatgacaggaacaaatagaaaatgaacatttctttcgcattttttgcttgtttggcaggca |
311 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48062035 |
tgacaggtttcattcacattacagttacaagccacattccatgacaggaacaaatagaaaatgaacatttcttttgcattttttgcttgtttggcaggca |
48061936 |
T |
|
| Q |
312 |
gagtactttgaagagattcttagagaaggtttctctcatcctgctgtgcaagggattgtaatgtttgtgggtccagcacaggctggtttcaacagtacac |
411 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48061935 |
gagtactttgaagagattcttagagaaggttactctcatcctgctgtgcaagggattgtaatgtttgtgggtccagcacaggctggtttcaacagtacac |
48061836 |
T |
|
| Q |
412 |
tccttgcagatgcagattttcaaaatactccaactggagacgttgtggataagttgattcttgagtggggatctgggccacatacggccatagcagacag |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48061835 |
tccttgcagatgcagattttcaaaatactccaactggagacgttgtggataagttgattcttgagtggggatctgggccacatacggccatagcaaacag |
48061736 |
T |
|
| Q |
512 |
tagaggaattatagatctttcattacatcacggggattataatgtgaccgtta |
564 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48061735 |
tagaggaattatagatctttcattacatcacggggattatgatgtgaccgtta |
48061683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 307 - 556
Target Start/End: Complemental strand, 48105723 - 48105474
Alignment:
| Q |
307 |
aggcagagtactttgaagagattcttagagaaggtttctctcatcctgctgtgcaagggattgtaatgtttgtgggtccagcacaggctggtttcaacag |
406 |
Q |
| |
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|||||||||| ||||||||| | || ||||| | || |||||||| || || |||||||| ||||||||| ||||||||||| |||||||||||||| |
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| T |
48105723 |
aggcagagtattttgaagaggtactaagagaggcttattctcatccagcagttgaagggattataatgtttgctggtccagcacaagctggtttcaacag |
48105624 |
T |
|
| Q |
407 |
tacactccttgcagatgcagattttcaaaatactccaactggagacgttgtggataagttgattcttgagtggggatctgggccacatacggccatagca |
506 |
Q |
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|||||| ||||||||| || |||| |||| ||||||||||||| | |||||||| || ||||||||||| |||||| |||||| |||| ||||||||| |
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| T |
48105623 |
tacacttcttgcagatacaaatttccaaactactccaactggacaagttgtggacaatttgattcttgaatggggaagtgggccttatacagccatagca |
48105524 |
T |
|
| Q |
507 |
gacagtagaggaattatagatctttcattacatcacggggattataatgt |
556 |
Q |
| |
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|| |||||||||||| ||||| ||||||||||||| || |||||| |||| |
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| T |
48105523 |
gatagtagaggaattgtagatatttcattacatcatggagattatgatgt |
48105474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 299 - 556
Target Start/End: Complemental strand, 48066126 - 48065869
Alignment:
| Q |
299 |
tgtttggcaggcagagtactttgaagagattcttagagaaggtttctctcatcctgctgtgcaagggattgtaatgtttgtgggtccagcacaggctggt |
398 |
Q |
| |
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|||| |||||||| ||| ||||||||||| || ||||| | || ||||||||| | ||| |||||||| |||||||||| ||||||||||| || ||| |
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| T |
48066126 |
tgttgggcaggcaatgtattttgaagagatactaagagaggcttactctcatccagatgttgaagggattataatgtttgtaggtccagcacaagccggt |
48066027 |
T |
|
| Q |
399 |
ttcaacagtacactccttgcagatgcagattttcaaaatactccaactggagacgttgtggataagttgattcttgagtggggatctgggccacatacgg |
498 |
Q |
| |
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|||| || |||| |||||||| ||| ||||||||||||||||||| |||||||||||||| ||| | ||| |||||||||| |||| | ||||| | |
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| T |
48066026 |
ttcaccaacacacaacttgcagacgcaaattttcaaaatactccaaccggagacgttgtggacaagcttattggtgagtggggaactggaactcatacag |
48065927 |
T |
|
| Q |
499 |
ccatagcagacagtagaggaattatagatctttcattacatcacggggattataatgt |
556 |
Q |
| |
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|||||||||||||||||||||| |||||| ||||| ||||||| || |||||| |||| |
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| T |
48065926 |
ccatagcagacagtagaggaatgatagatatttcactacatcatggagattatgatgt |
48065869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 252 - 556
Target Start/End: Complemental strand, 48098998 - 48098695
Alignment:
| Q |
252 |
atgacaggaacaaatagaaaatgaacatttctttcgcattttttgcttgtttggcaggcagagtactttgaagagattcttagagaaggtttctctcatc |
351 |
Q |
| |
|
|||||| ||||||| |||||| |||||||||||| |||||||| ||||| ||||||||||||| ||||||| | || ||||| | || |||||||| |
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|
| T |
48098998 |
atgacaagaacaaacggaaaataaacatttctttctcattttttt-ttgttgggcaggcagagtatcttgaagacgtgctaagagaggcttactctcatc |
48098900 |
T |
|
| Q |
352 |
ctgctgtgcaagggattgtaatgtttgtgggtccagcacaggctggtttcaacagtacactccttgcagatgcagattttcaaaatactccaactggaga |
451 |
Q |
| |
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| ||||| ||||||||| |||| |||| ||||| | ||| | ||||||| | |||| | || ||||||||| |||||| |||||||||||||||||| |
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| T |
48098899 |
cagctgttcaagggattataatttttgctggtccggaacaagttggtttcggcgatacattactcgcagatgcaaattttcgaaatactccaactggaga |
48098800 |
T |
|
| Q |
452 |
cgttgtggataagttgattcttgagtggggatctgggccacatacggccatagcagacagtagaggaattatagatctttcattacatcacggggattat |
551 |
Q |
| |
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| ||||||| ||| |||||| |||||||||| |||| | ||||| |||||||||||||||||||| ||||||||| ||||| | ||||| || |||||| |
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| T |
48098799 |
cattgtggacaagctgattcgtgagtggggaactggaactcatacagccatagcagacagtagagggattatagatatttcacttcatcatggagattat |
48098700 |
T |
|
| Q |
552 |
aatgt |
556 |
Q |
| |
|
|||| |
|
|
| T |
48098699 |
gatgt |
48098695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 48099228 - 48099130
Alignment:
| Q |
52 |
ttcaaaagtaatataataaacttcttc-tcttcaagaaaatttgttatttataaattctgcttatcacactagtcaaaatacaatgcttcgtgatttaa |
149 |
Q |
| |
|
||||||| |||| |||||| || |||| |||||| | |||||||||| |||||| |||||||||| || | ||||||||||||||||| | |||||||| |
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|
| T |
48099228 |
ttcaaaactaatctaataagctccttcctcttcagggaaatttgttagttataacttctgcttattactcaagtcaaaatacaatgctgcatgatttaa |
48099130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 556
Target Start/End: Original strand, 29805256 - 29805313
Alignment:
| Q |
499 |
ccatagcagacagtagaggaattatagatctttcattacatcacggggattataatgt |
556 |
Q |
| |
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|||||||||||| |||||||||||||||| ||||| | ||||| |||||||| |||| |
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|
| T |
29805256 |
ccatagcagacactagaggaattatagatatttcactgcatcatcgggattatgatgt |
29805313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 318 - 541
Target Start/End: Complemental strand, 50230706 - 50230483
Alignment:
| Q |
318 |
tttgaagagattcttagagaaggtttctctcatcctgctgtgcaagggattgtaatgtttgtgggtccagcacaggctggtttcaacagtacactccttg |
417 |
Q |
| |
|
||||||||||| || ||||| | || ||||||||| ||||| |||||||| |||||||||| |||||||| || || | ||||| || |||| |||| |
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| T |
50230706 |
tttgaagagatactaagagaggcttactctcatccagctgttgaagggattataatgtttgtaggtccagcgcaagccgatttcatcaacacacaacttg |
50230607 |
T |
|
| Q |
418 |
cagatgcagattttcaaaatactccaactggagacgttgtggataagttgattcttgagtggggatctgggccacatacggccatagcagacagtagagg |
517 |
Q |
| |
|
|||||||| ||||| ||||||||||||| |||||||||||||| ||| | ||| |||||||||| || | | ||||| |||||| |||||| |||| |
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|
| T |
50230606 |
cagatgcaaattttaaaaatactccaaccggagacgttgtggacaagcttattggtgagtggggaacttgaactcatacagccatatcagacaatagata |
50230507 |
T |
|
| Q |
518 |
aattatagatctttcattacatca |
541 |
Q |
| |
|
||| ||||| ||||| ||||||| |
|
|
| T |
50230506 |
aatcgtagatatttcactacatca |
50230483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 189
Target Start/End: Complemental strand, 50230940 - 50230860
Alignment:
| Q |
109 |
tgcttatcacactagtcaaaatacaatgcttcgtgatttaagaccaaagatggatagtttatctatctgttttcatctgtt |
189 |
Q |
| |
|
||||||| |||| ||||||||||||| ||| | ||||||| || |||||| |||||||| |||||| ||||| |||||| |
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|
| T |
50230940 |
tgcttattacacaagtcaaaatacaaagctgcaagatttaaaacataagatgcatagtttagctatctattttcgtctgtt |
50230860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 318 - 556
Target Start/End: Original strand, 1482 - 1719
Alignment:
| Q |
318 |
tttgaagagattcttagagaaggtttctctcatcctgctgtgcaagggattgtaatgtttgtgggtccagcacaggctggtttcaacagtacactccttg |
417 |
Q |
| |
|
||||||||||| || ||||||| || |||| |||| ||||| |||||||| |||||||||| |||||||| || || ||||||| || || | |||| |
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|
| T |
1482 |
tttgaagagatactaagagaagcttactcttatccagctgttgaagggattataatgtttgtaggtccagcgcaagccggtttcatcaacacgcaacttg |
1581 |
T |
|
| Q |
418 |
cagatgcagattttcaaaatactccaactggagacgttgtggataagttgattcttgagtggggatctgggccacatacggccatagcagacagtagagg |
517 |
Q |
| |
|
|||||||| ||||| ||||||| |||| ||||||||||||| ||| | ||| |||||||||| |||| | ||||| ||||| |||||| |||||| |
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|
| T |
1582 |
cagatgcaaattttaaaaatac-acaaccagagacgttgtggacaagcttattggtgagtggggaactggaactcatacaaccatatcagacaatagagg |
1680 |
T |
|
| Q |
518 |
aattatagatctttcattacatcacggggattataatgt |
556 |
Q |
| |
|
||| ||||| ||||| ||||||| || |||||| |||| |
|
|
| T |
1681 |
aatcgtagatatttcactacatcatggagattatgatgt |
1719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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