View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13133_high_13 (Length: 573)
Name: NF13133_high_13
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_high_13 |
 | |
|
| [»] scaffold0267 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0267 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 10 - 555
Target Start/End: Original strand, 23374 - 23919
Alignment:
| Q |
10 |
aagaatatttgttgacgtgaattttgacgagaaccacattcagctgtatgcctgttccaatgatatgaatacagctagtaagctggtgaatgatgtttta |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23374 |
aagaatatttgttgacgtgaattttgacgagaaccacattcagatgtatgcctgttccaatgatatgaatacagctagtaagctggtgaatgatgtttta |
23473 |
T |
|
| Q |
110 |
caatatgagaagaagaggttacacactgaatgtatggaaaaatgtttgtatcatgggtttggttcctcatcacccgtggctatgtttggctctggtgctg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23474 |
caatatgagaagaagaggttacacactgaatgtatggaaaaatgtttgtatcatgggtttggttcctcatcacccgtggctatgtttggctctggtgctg |
23573 |
T |
|
| Q |
210 |
agataaagcatttggaacttgagaagcttcccttgagtgttgatgtgtttcacccaaacgtaaatgcaattgacgaaatggagctcctgatgttttttga |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23574 |
agataaagcatttggaacttgagaagcttcccttgagtgttgatgtgtttcacccaaacgtaaatgcaattgacgaaatggagctcctgatgttttttga |
23673 |
T |
|
| Q |
310 |
gaaaaatacttttggttgtatatgtgacatgcaaaagttcacaggcatggtgaaagatgttgaggataaagcaaaatggggcaggataacatttatgacc |
409 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23674 |
gaaaaatacttctggttgtatatgtgacatgcaaaagttcacaggcatggtgaaagatgttgaggataaagcaaaatggggcaagataacatttatgacc |
23773 |
T |
|
| Q |
410 |
tccaatgctgccaaaagagctgctgagctggatggagaagagttttgtggttcgcccctaaaaatagttcattcacagtcagctatgggaggggatacaa |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23774 |
tccaatgctgccaaaagagctgctgagctggatggagaagagttttgtggttcgcccctaaaaatagttcattcacagtcagctatgggaggggatacaa |
23873 |
T |
|
| Q |
510 |
cattttcatttcctgcagttgaagcaagaatttcttggcttcgtag |
555 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23874 |
cattttcatttcctgcagttgaagcaagaatttcttggcttcgtag |
23919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 10 - 555
Target Start/End: Original strand, 3879462 - 3880007
Alignment:
| Q |
10 |
aagaatatttgttgacgtgaattttgacgagaaccacattcagctgtatgcctgttccaatgatatgaatacagctagtaagctggtgaatgatgtttta |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3879462 |
aagaatatttgttgacgtgaattttgacgagaaccacattcagttgtatgcctgttccaatgatatgaatacagctagtaagctggtgaatgatgtttta |
3879561 |
T |
|
| Q |
110 |
caatatgagaagaagaggttacacactgaatgtatggaaaaatgtttgtatcatgggtttggttcctcatcacccgtggctatgtttggctctggtgctg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3879562 |
caatatgagaagaagaggttacacactgaatgtatggaaaaatgtttgtatcatgggtttggttcctcatcacccgtggctatgtttggctctggtgctg |
3879661 |
T |
|
| Q |
210 |
agataaagcatttggaacttgagaagcttcccttgagtgttgatgtgtttcacccaaacgtaaatgcaattgacgaaatggagctcctgatgttttttga |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3879662 |
agataaagcatttggaacttgagaagcttcccttgagtgttgatgtgtttcacccaaacgtaaatgcaattgacgaaatggagctcctgatgttttttga |
3879761 |
T |
|
| Q |
310 |
gaaaaatacttttggttgtatatgtgacatgcaaaagttcacaggcatggtgaaagatgttgaggataaagcaaaatggggcaggataacatttatgacc |
409 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3879762 |
gaaaaatacttctggttgtatatgtgacatgcaaaagttcacaggcatggtgaaagatgttgaggataaagcaaaatggggcaagataacatttatgacc |
3879861 |
T |
|
| Q |
410 |
tccaatgctgccaaaagagctgctgagctggatggagaagagttttgtggttcgcccctaaaaatagttcattcacagtcagctatgggaggggatacaa |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3879862 |
tccaatgctgccaaaagagctgctgagctggatggagaagagttttgtggttcgcccctaaaaatagttcattcacagtcagctatgggaggggatacaa |
3879961 |
T |
|
| Q |
510 |
cattttcatttcctgcagttgaagcaagaatttcttggcttcgtag |
555 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3879962 |
cattttcatttcctgcagttgaagcaagaatttcttggcttcgtag |
3880007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 10 - 555
Target Start/End: Complemental strand, 39320208 - 39319662
Alignment:
| Q |
10 |
aagaatatttgttgacgtgaattttgacgagaaccacattcagctgtatgcctgttccaatgatatgaatacagctagtaagctggtgaatgatgtttta |
109 |
Q |
| |
|
|||||| |||||||| || ||| |||||||||| | ||| ||| | |||||| ||| ||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
39320208 |
aagaatctttgttgaagtaaatattgacgagaatctcatccagttatatgccacttcacatgatatgaatacagctagtatgatggtgaatgatgtttta |
39320109 |
T |
|
| Q |
110 |
caatatgagaagaagaggttacacactgaatgtatggaaaaatgtttgtatcatgggtttggttcctcatcacccgtggctatgtttggctctggtgctg |
209 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | || ||||||| |||||||||| |
|
|
| T |
39320108 |
gaatatgagaaaaagaggttacgcactgaatgtatggaaaaatgtttgtatcatgggtcaggttcctcatcacctatagcattgtttgggtctggtgctg |
39320009 |
T |
|
| Q |
210 |
agataaagcatttggaacttgagaagcttcccttgagtgttgatgtgtttcaccc-aaacgtaaatgcaattgacgaaatggagctcctgatgttttttg |
308 |
Q |
| |
|
||||||||||||||||||||||||||| | | |||||||||||||||| |||||| |||| |||||| |||| | || | |||||||||||||||||| | |
|
|
| T |
39320008 |
agataaagcatttggaacttgagaagcattcattgagtgttgatgtgtgtcacccaaaacataaatgaaattaatgataaggagctcctgatgtttttgg |
39319909 |
T |
|
| Q |
309 |
agaaaaatacttttggttgtatatgtgacatgcaaaagttcacaggcatggtgaaagatgttgaggataaagcaaaatggggcaggataacatttatgac |
408 |
Q |
| |
|
|||| ||||| | ||||||||||||| || | |||||| | ||||||||||| ||||||||||||| || ||| ||||||| |||||||||| | | |
|
|
| T |
39319908 |
agaagaatacctcaggttgtatatgtgcagtgtacaagttccctggcatggtgaaggatgttgaggatagagaaaagtggggcaagataacattttcgtc |
39319809 |
T |
|
| Q |
409 |
ctccaatgctgccaaaagagctgctgagctggatggagaagagttttgtggttcgcccctaaaaatagttcattcacagtcagctatgggaggggataca |
508 |
Q |
| |
|
| | ||||||||||||||||||| |||||||||||||| |||||||| || || || | |||||| ||| |||||| |||| ||| |||||||||| | |
|
|
| T |
39319808 |
ccctgatgctgccaaaagagctgcagagctggatggagaggagttttgcggctcctccttgaaaatacttccttcacattcagttattggaggggataaa |
39319709 |
T |
|
| Q |
509 |
acattttcatttcctgcagttgaagcaagaatttcttggcttcgtag |
555 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||| ||||| |||||| |
|
|
| T |
39319708 |
acattttcatttcctgaagtgaaagcaaaaatttattggcctcgtag |
39319662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University