View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_high_15 (Length: 479)
Name: NF13133_high_15
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 470
Target Start/End: Complemental strand, 4934953 - 4934496
Alignment:
| Q |
19 |
tatatgtgtagctaagttttcatcattggacattgtcttagtatttagaaataaaacaaaacatgacacgtctatgtttgttaaatctatgcttatcaat |
118 |
Q |
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| T |
4934953 |
tatatgtgtagctaagttcccaccattggacatcgtcttattatttataaataaaacaaaacatgacatgtctatgtttgttaaatctatgcttatcaat |
4934854 |
T |
|
| Q |
119 |
actatcaaataactaaatctctttattagcataattttcatttagacatacaactataaggttgagtttgaatctagataaagacgtctaacttaacaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4934853 |
actatcaaataactaaatctctttattagcataattttcagttagacatacaattgtaaggttgagtttgaatctagataaagacgtctaacttaacaat |
4934754 |
T |
|
| Q |
219 |
attgatattttaaaa---aataaatttgacgttttcaattaaacta-------gcgtgaattatttattttataccgactatagtagatcctcattatcc |
308 |
Q |
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|||||||||| |||| || ||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
4934753 |
attgatatttaaaaataaaaaaaaattgacgttttcaattaaactactcattagcgtgaattattt----tataccgactatagtatatcctcattatcc |
4934658 |
T |
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| Q |
309 |
tcccttagatattcaaaaacgtgtcttgatttccaagggtaccccattttgttattcagtcaaatctcacattacgatgaaggacctaagctcttttaat |
408 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4934657 |
tcccttagatatgcaaaaacgtgtcttgatttccaagggtatcccattttgttattcagtcaaatctcacattacgatgaaggatctaagctcttttaat |
4934558 |
T |
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| Q |
409 |
tcgtgtggatcaactaaactatatccatccatctcaccacaatttctttttaatacttcatc |
470 |
Q |
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| T |
4934557 |
tcgtgtggatcaactaaactatatccatccatctcaccacaatttctttttaatacttcatc |
4934496 |
T |
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