View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_high_16 (Length: 470)
Name: NF13133_high_16
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 28 - 427
Target Start/End: Complemental strand, 45777375 - 45776976
Alignment:
| Q |
28 |
tgttaacctaggtaaatcttagtggtttataaagtaaactataaacatatgaaaaattgattttacaaattaattaggtggtaaacaacattttaacact |
127 |
Q |
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| T |
45777375 |
tgttaacctaggtaaatcttagtggtttataaagtaaactataaagatttgaaaaattgattttacaaattaattaggtggtaaacaacattttaacact |
45777276 |
T |
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| Q |
128 |
tcatgaagtgaaactgaatttgtgtatgagattttgttcacatttacagaaacctaaaattaattttcttgttcacaattgctttatacagaaattcaag |
227 |
Q |
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| T |
45777275 |
tcatgaagtgaaactgaatttgtgtatgagattttgttcacatttacagaaacccaaaattaattttcttgttcacaattgctttatacagaaattcaag |
45777176 |
T |
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| Q |
228 |
atgtggtgttggttattaaaccttgcgggcaagcagggctaacaagggtggtttgctattgagactcatttcaagaaatgcaattgattactacaggaaa |
327 |
Q |
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| T |
45777175 |
atgtggtgttggttattaaaccttgcgggcaagcagggctaacaagcgtggtttgctattgagactcatttcaagaaatgcaattgattactactggaaa |
45777076 |
T |
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| Q |
328 |
cgctccttaatttgcaccattatgttaacctattggagatcattcataattatatgaagaaggattgaattttactatccatcatactctttgggaggat |
427 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45777075 |
cgctccttaatttgcaccattatgttaacctattagagatcattcataattatatgaagaaggattgaattttactatccatcatactctttgggaggat |
45776976 |
T |
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