View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_high_19 (Length: 443)
Name: NF13133_high_19
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 77760 - 78177
Alignment:
| Q |
18 |
gattttgaggggtttggtagatattggtggtggcgaagtagtgaaggatgaagttgctcgtgaactagggtttgagaaagtatcagaagaattcattcca |
117 |
Q |
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| T |
77760 |
gattttgaggggtttggtagatattggtggtggcgaagtagtgaaggatgaagttgcgcgtgaactagggtttgagaaagtatcagaagaattcattcca |
77859 |
T |
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| Q |
118 |
gaatgcaaatcaaaagcagtacttttcaaacacgtcaagacgggtgcacaagtcatctctgtttcaaacaaagatgagaacaaagtctttggcattgttt |
217 |
Q |
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| T |
77860 |
gaatgcaaatcaatagcagtacttttcaaacacgtcaagacgggtgcacaagtcatctctgtttcaaacaaagatgagaacaaagtctttggcattgttt |
77959 |
T |
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| Q |
218 |
tccgaactcctcccaatgattccactggtattcctcacattttagagcacagtgttttgtgtggttcaagaaaatatcctctcaaagaaccatttgttga |
317 |
Q |
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| T |
77960 |
tccgaactcctcccaatgattccactggtattcctcacattttagagcacagtgttttgtgtggttcaagaaaatatcctctcaaagaaccatttgttga |
78059 |
T |
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| Q |
318 |
gttactcaaaggaagcttacacactttcctcaatgcattcacttatcctgataggacttgttaccctgtcgcctccaccaataccaaggatttttataat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
78060 |
gttactcaaaggaagcttacacactttcctcaatgcattcacttatcctgataggacttgttaccctgtcgcctccaccaataccaaggatttttataat |
78159 |
T |
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| Q |
418 |
ttggatgatgtccatctc |
435 |
Q |
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| T |
78160 |
ttggttgacgtctatctc |
78177 |
T |
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