View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_high_23 (Length: 399)
Name: NF13133_high_23
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_high_23 |
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| [»] scaffold0831 (1 HSPs) |
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Alignment Details
Target: scaffold0831 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0831
Description:
Target: scaffold0831; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 40 - 384
Target Start/End: Original strand, 1760 - 2104
Alignment:
| Q |
40 |
atcttatagtcgtcattaacagggtcataaccatatccatgaagatgaaaccaaacagtattaaaaggtaaaaactgagccgaactagaaggaacagttt |
139 |
Q |
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| T |
1760 |
atcttatagtcgttattaacatggtcataaccaaatccatgaatatcaaatgaaaaacatttataaaataaaaattgaacagggctaggaggaacaaact |
1859 |
T |
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| Q |
140 |
ctaattccttagtagctggattccataatttaatatattcatgataaaaatcagataaacaaagaatgccgttgataccagaatccaacaaatgagtata |
239 |
Q |
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| T |
1860 |
tcaattccttagtagctggattccataatttaatatattcatgataaaaatcagataaacaaagaatgccgttgataccagaatccaacaaatgagtata |
1959 |
T |
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| Q |
240 |
agtactatcatcttccaatttgacccgattctcaaacttctcatcagagaggaaatacaaagtggaaccatgttgatcatatggcagtatctcctttata |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1960 |
agtactatcatcttccaatttgacccgattctcaaacttctcatcagagaggaaatacaaagtggaaccatgttgatcatatggcagtatctcctttata |
2059 |
T |
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| Q |
340 |
tttaggaaaagacatgtgccattgtacaatgatcgatgcataaat |
384 |
Q |
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| T |
2060 |
tttaggaaaagacatgtgtcattgtacaatgatcgatgcataaat |
2104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 1326902 - 1326663
Alignment:
| Q |
1 |
tcattaggtttatattgattaacataaacacgtcgaatgatcttatagtcgtcattaacagggtcataaccatatccatgaagatgaaaccaaacagtat |
100 |
Q |
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| T |
1326902 |
tcattaggtttatattgattaacataaacacgtcgaatgatcttatagtcgtcattaacagggtcataaccatatccatgaagatgaaaccaaacagtat |
1326803 |
T |
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| Q |
101 |
taaaaggtaaaaactgagccgaactagaaggaacagtttctaattccttagtagctggattccataatttaatatattcatgataaaaatcagataaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || | ||||||||| | |||||||||||| |
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| T |
1326802 |
taaaaggtaaaaactgagccgaactagaaggaacagtttccaattccttagtagctggattccataatgcaacaaattcatgatcacgatcagataaaca |
1326703 |
T |
|
| Q |
201 |
aagaatgccgttgataccagaatccaacaaatgagtataa |
240 |
Q |
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| T |
1326702 |
aagaacgtcgttaataccagaatccaacatattagtataa |
1326663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 6 - 162
Target Start/End: Complemental strand, 4877502 - 4877346
Alignment:
| Q |
6 |
aggtttatattgattaacataaacacgtcgaatgatcttatagtcgtcattaacagggtcataaccatatccatgaagatgaaaccaaacagtattaaaa |
105 |
Q |
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||||||||||| |||||||||||| | ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4877502 |
aggtttatattttttaacataaacatgacgaatgatcttatagtcgttattaacagggtcatagccatatccatgaagatgaaaccaaacagtattaaaa |
4877403 |
T |
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| Q |
106 |
ggtaaaaactgagccgaactagaaggaacagtttctaattccttagtagctggattc |
162 |
Q |
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| T |
4877402 |
ggtaaagactcagttgggctaggaggaacagtttccaattccttagtagctggattc |
4877346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 44185854 - 44185777
Alignment:
| Q |
34 |
cgaatgatcttatagtcgtcattaacagggtcataaccatatccatgaagatgaaaccaaacagtattaaaaggtaaa |
111 |
Q |
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| T |
44185854 |
cgaatgatcttatagtcgtcattaatagggtcatagccatatccatgaagatgaaaccaaacagtattaaaaggtaaa |
44185777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 381
Target Start/End: Complemental strand, 1326620 - 1326498
Alignment:
| Q |
259 |
ttgacccgattctcaaacttctcatcagagaggaaatacaaagtggaaccatgttgatcatatggcagtatctcctttatatttaggaaaagacatgtgc |
358 |
Q |
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||||||| ||||||||| || ||| ||||||| |||||||| ||||| | ||| || ||||| ||||||||||||||| ||||| ||| ||||| |
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| T |
1326620 |
ttgaccctattctcaaatttgtcaccagagagcaaatacaattctgaaccttcttgtggatgtggcaatatctcctttatattaaggaagagatatgtgt |
1326521 |
T |
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| Q |
359 |
cattgtacaatgatcgatgcata |
381 |
Q |
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| T |
1326520 |
cattgtacagtgaacaatgcata |
1326498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 5388079 - 5387856
Alignment:
| Q |
6 |
aggtttatattgattaacataaacacgtcgaatgatcttatagtcgtcattaacagggtcataaccatatccatgaagatgaaaccaaacagtattaaaa |
105 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
5388079 |
aggtttatattgattaacataaacacgacgaatgatcttatagtcgtcattaatagggtcataaccatacccatgaagacaaaaccaaacagtattaaaa |
5387980 |
T |
|
| Q |
106 |
ggtaaaaactgagccgaactagaaggaacagtttctaattccttagtagctggattccataatttaatatattcatgataaaaatcagataaacaaagaa |
205 |
Q |
| |
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|||||| ||| ||||| ||||||||||| |||| ||||||||||||||||||||||||||| |||| | | |||| || |||||| |||||||| | |
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| T |
5387979 |
ggtaaagactcagccgggttagaaggaacattttccaattccttagtagctggattccataatgcaataaactgttgatcaagatcagagaaacaaagca |
5387880 |
T |
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| Q |
206 |
tgccgttgataccagaatccaaca |
229 |
Q |
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| T |
5387879 |
catcattaataccagaatccaaca |
5387856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 384
Target Start/End: Complemental strand, 5387784 - 5387679
Alignment:
| Q |
279 |
ctcatcagagaggaaatacaaagtggaaccatgttgatcatatggcagtatctcctttatatttaggaaaagacatgtgccattgtacaatgatcgatgc |
378 |
Q |
| |
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|||| ||||||| ||||||| | ||||||||| |||| || ||||| |||||||||||||| ||||| ||| | ||| || |||||||| |||||| |
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| T |
5387784 |
ctcagcagagagcaaatacagattggaaccatcttgaggatgtggcaatatctcctttatatataggatgagaaaggtgtgatcatacaatgagcgatgc |
5387685 |
T |
|
| Q |
379 |
ataaat |
384 |
Q |
| |
|
|||||| |
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| T |
5387684 |
ataaat |
5387679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 26531977 - 26531929
Alignment:
| Q |
34 |
cgaatgatcttatagtcgtcattaacagggtcataaccatatccatgaa |
82 |
Q |
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| T |
26531977 |
cgaatgatcttatagtcatcattaacatggtcataaccacatccatgaa |
26531929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 6432236 - 6432133
Alignment:
| Q |
32 |
gtcgaatgatcttatagtcgtcattaacagggtcataaccatatccatgaagatgaaaccaaacagtattaaaaggtaaaaactgagccgaactagaagg |
131 |
Q |
| |
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|||||||||||||| |||||||| ||| |||||||||||||||||| |||| || ||| | ||||| |||||||| |||||||| | ||||| ||| |
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| T |
6432236 |
gtcgaatgatcttaacatcgtcattgacatggtcataaccatatccattaagacgacacctagtagtatcaaaaggtacaaactgagaaggactaggagg |
6432137 |
T |
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| Q |
132 |
aaca |
135 |
Q |
| |
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|||| |
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| T |
6432136 |
aaca |
6432133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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