View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_high_28 (Length: 348)
Name: NF13133_high_28
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_high_28 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 348
Target Start/End: Complemental strand, 32638174 - 32637843
Alignment:
| Q |
18 |
gtataagtgttgtaaactatgaagtattgaat-tgaactaggtattccaaaatttagaatactaacatgctttactaatcagctgcattaggcatggtgg |
116 |
Q |
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| T |
32638174 |
gtataagtattgtaaactatgaagtattgaatatgaactaggtattccaaaatttagaatactaacatgctttactaatcagctgcattaggcatggtgg |
32638075 |
T |
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| Q |
117 |
ttctgttttcttatttttaagtataatattagttttaaatttaatatgtgcatgctacataatattcatggttaacgtgagatcacgtttaactnnnnnn |
216 |
Q |
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| T |
32638074 |
ttctgttttcttatttttaagtataatattagttttaaatttaatatgtgcatgctacataacattcatggttaatgtgagatcacgtttaactaaaaaa |
32637975 |
T |
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| Q |
217 |
nnnggtccaagcatattagaattagacgtggaagcgacctctctgcacaatctaatttgatctgcactgcagacagcaactatttcactcattcaatctg |
316 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32637974 |
aaaggttcaagcatattagaattagacgtggaagcgacctctctgcacaatctaatttgatctgcactgcagacagcaactatttcactcattcaatctg |
32637875 |
T |
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| Q |
317 |
catagtccctcctcccgtatgattaaaacttt |
348 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
32637874 |
catagtccctcctcccgtatgattaaaacttt |
32637843 |
T |
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