View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13133_high_3 (Length: 761)
Name: NF13133_high_3
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 10 - 342
Target Start/End: Original strand, 10463271 - 10463603
Alignment:
| Q |
10 |
attattctatttttctgtttgaaagcaaagttattggtgtgtcaagtgtgcgttagacgtttcacattagatgaaaaagtttatgtttaacagcgtataa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10463271 |
attattctatttttctgtttgaaagcaaagttattggtgtgtcaagtgtgcgttagacgtttcacattagatgaaaaagtttatgtttaacagcgtataa |
10463370 |
T |
|
| Q |
110 |
gtgagaaaatctttgtatctaatgtcttaagattcaacatctgtgtagtagctcttagttcaacaattgatccccaggatcgcgttatgacacaatagtc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10463371 |
gtgagaaaatctttgtatctaatgtcttaagattcaacatctgtgtagtagctcttagttcaacaattgatccccaggatcgcgttatgacacaatagtc |
10463470 |
T |
|
| Q |
210 |
gtatcaacatcgatgacttgactaaaggtgaccgagtgggtatcagcgacactacaaatgaatgttttggatgggggagagtggaagaaaatgtgattga |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10463471 |
gtatcaacatcgatgacttgactaaaggtgaccgagtgggtatcaacgacactacaaatgaatgttttggatgggggagagtggaagaaaatgtgattga |
10463570 |
T |
|
| Q |
310 |
aattttatatgatcttttattatgttattcttt |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
10463571 |
aattttatatgatcttttattatgttattcttt |
10463603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 379 - 529
Target Start/End: Original strand, 10463640 - 10463791
Alignment:
| Q |
379 |
ctaaccctt-ataatagtagtcatccaaatacattcttagagattttaattccctttcaaactcaactcttttcccatagaacttcacataaaattgnnn |
477 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10463640 |
ctaacccttgataatagtagtcatccaaatacattcttagagattttaattccctttcaaactcaactcttttcccatagaacttcacataaaattgttt |
10463739 |
T |
|
| Q |
478 |
nnnnnaaataggtaacctaaagctaagttaattccctgttaaccctgatgag |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10463740 |
tttttaaataggtaacctaaagctaagttaattccctgttaaccctgatgag |
10463791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 631 - 745
Target Start/End: Original strand, 10463895 - 10464009
Alignment:
| Q |
631 |
ctgccaaaatgtgtaatagcctctctgctcgtgagcatacatgaagaattccttttcgggtccacatggccaaaacctatacggaaacttcagaaagatc |
730 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10463895 |
ctgccaaaatgtgtaatagcctctctgctcgtgagcatacatgaagaattccttttcgggtccacatggccaaaacctatacggaaacttcagaaagatc |
10463994 |
T |
|
| Q |
731 |
ttggtgtacaccatt |
745 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10463995 |
ttggtgtacaccatt |
10464009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University