View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_high_30 (Length: 314)
Name: NF13133_high_30
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 302
Target Start/End: Complemental strand, 32412078 - 32411792
Alignment:
| Q |
16 |
gttttgacaaaaaatatggtaagatcttcctctgtataactaattgcatattcataatcattataagtgtgctttgtttgtactgccacaactttatgta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32412078 |
gttttgacaaaaaatatggtaagatcttcctctgtataactaattgcatattcataatcattataagtgtgctttgtttgtactgccacaactttatgta |
32411979 |
T |
|
| Q |
116 |
tcactttctaagcaaggaaattcaaaaggtttccttttccccttactttttatgtatttttgttcttcaaatgcagggaacaaaaactgtggagggattg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32411978 |
tcactttctaagcaaggaaattcaaaaggtttccttttccccttactttttatgtatttttgttcttcaaatgcaggtaacaaaaactgtggagggattg |
32411879 |
T |
|
| Q |
216 |
gcgtttaagttgcaaagaaccgacagagtttgcttcagtactaattctttcaaggaaatgaagaaactaagacttttacaacttgat |
302 |
Q |
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| T |
32411878 |
gcgtttaagttgcaaagaaccgacagagtttgcttcagtactaattctttcaaggaaatgaagaaactaagacttttacaacttgat |
32411792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 302
Target Start/End: Complemental strand, 12599883 - 12599761
Alignment:
| Q |
180 |
cttcaaatgcagggaacaaaaactgtggagggattggcgtttaagttgcaaagaaccgacagagtttgcttcagtactaattctttcaaggaaatgaaga |
279 |
Q |
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|||||| ||||||||||| ||||||| |||||||||| || ||| ||||||||||| | || ||| || |||||| || |||||||||| ||||||| |
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| T |
12599883 |
cttcaactgcagggaacagaaactgtagagggattggttttgaaggtgcaaagaaccaatagggttctctagagtactgatactttcaaggagatgaaga |
12599784 |
T |
|
| Q |
280 |
aactaagacttttacaacttgat |
302 |
Q |
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| T |
12599783 |
aactaagacttttacaacttgat |
12599761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 179 - 301
Target Start/End: Complemental strand, 14767772 - 14767650
Alignment:
| Q |
179 |
tcttcaaatgcagggaacaaaaactgtggagggattggcgtttaagttgcaaagaaccgacagagtttgcttcagtactaattctttcaaggaaatgaag |
278 |
Q |
| |
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|||||| || ||||||||||| ||||| || |||||| || || ||||||||||| ||||||| |||||||||||||| ||||| |||||||||| |
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| T |
14767772 |
tcttcacatacagggaacaaatactgtcgaaggattgattttgaacttgcaaagaacaagcagagttagcttcagtactaatgctttccaggaaatgaat |
14767673 |
T |
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| Q |
279 |
aaactaagacttttacaacttga |
301 |
Q |
| |
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||||| ||||||||||||||||| |
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| T |
14767672 |
aaactgagacttttacaacttga |
14767650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 307
Target Start/End: Complemental strand, 3263383 - 3263266
Alignment:
| Q |
190 |
agggaacaaaaactgtggagggattggcgtttaagttgcaaagaaccgacagagtttgcttcagtactaattctttcaaggaaatgaagaaactaagact |
289 |
Q |
| |
|
|||||||| ||||||| ||||||||| || | ||| |||||||| |||||||||||||||| || |||||||||||||||||||||| || ||||| |
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| T |
3263383 |
agggaacagaaactgtagagggattgattttgaggtttgaaagaaccagcagagtttgcttcagtgctgattctttcaaggaaatgaagaatctgagact |
3263284 |
T |
|
| Q |
290 |
tttacaacttgatgatgt |
307 |
Q |
| |
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| ||||||||||| |||| |
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| T |
3263283 |
tctacaacttgataatgt |
3263266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 190 - 302
Target Start/End: Complemental strand, 3287354 - 3287242
Alignment:
| Q |
190 |
agggaacaaaaactgtggagggattggcgtttaagttgcaaagaaccgacagagtttgcttcagtactaattctttcaaggaaatgaagaaactaagact |
289 |
Q |
| |
|
|||||||| ||||||| |||||||||| || |||| ||||||||| | |||||||||||||||||| |||||||||||| | ||||| |||| ||||| |
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| T |
3287354 |
agggaacagaaactgtagagggattggttttgaagtcgcaaagaactggcagagtttgcttcagtacgaattctttcaagaagatgaaccaactcagact |
3287255 |
T |
|
| Q |
290 |
tttacaacttgat |
302 |
Q |
| |
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| | ||||||||| |
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| T |
3287254 |
tctgcaacttgat |
3287242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 180 - 302
Target Start/End: Complemental strand, 3408172 - 3408050
Alignment:
| Q |
180 |
cttcaaatgcagggaacaaaaactgtggagggattggcgtttaagttgcaaagaaccgacagagtttgcttcagtactaattctttcaaggaaatgaaga |
279 |
Q |
| |
|
||||| |||||||||||| ||||||| |||| | || ||||| ||||||||||| | ||||| | |||| ||||||||| ||||| | || ||||||| |
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| T |
3408172 |
cttcatatgcagggaacagaaactgttgaggcactgatttttaacttgcaaagaacaggcagaggtagctttagtactaatactttccaagatatgaaga |
3408073 |
T |
|
| Q |
280 |
aactaagacttttacaacttgat |
302 |
Q |
| |
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|||| |||||||||||||||||| |
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| T |
3408072 |
aacttagacttttacaacttgat |
3408050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 302
Target Start/End: Complemental strand, 3325820 - 3325708
Alignment:
| Q |
190 |
agggaacaaaaactgtggagggattggcgtttaagttgcaaagaaccgacagagtttgcttcagtactaattctttcaaggaaatgaagaaactaagact |
289 |
Q |
| |
|
||||||||||| |||| |||||||||| || ||| ||||||||||| ||| || ||| |||||| ||||||||||||| ||||||||||| ||||| |
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| T |
3325820 |
agggaacaaaatctgtagagggattggttttgaaggtgcaaagaaccattagaattcccttaagtactgattctttcaaggagatgaagaaactgagact |
3325721 |
T |
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| Q |
290 |
tttacaacttgat |
302 |
Q |
| |
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||| ||||||||| |
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| T |
3325720 |
tttgcaacttgat |
3325708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 269
Target Start/End: Original strand, 13786800 - 13786883
Alignment:
| Q |
186 |
atgcagggaacaaaaactgtggagggattggcgtttaagttgcaaagaaccgacagagtttgcttcagtactaattctttcaag |
269 |
Q |
| |
|
|||||||||| |||| ||| ||||| |||| || |||| ||||||||| | ||||||||||||||||||| | ||||||||| |
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| T |
13786800 |
atgcagggaaggaaaaatgtagaggggttggttttgaagtcgcaaagaactggcagagtttgcttcagtactgaatctttcaag |
13786883 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 303
Target Start/End: Complemental strand, 8372497 - 8372384
Alignment:
| Q |
190 |
agggaacaaaaactgtggagggattggcgtttaagttgcaaagaaccgacagagtttgcttcagtactaattctttcaaggaaatgaagaaactaagact |
289 |
Q |
| |
|
|||||||||||||||| ||||| ||| || |||| ||||||||| | |||| ||||||| | |||||| ||||| |||| ||| | ||||| || || |
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| T |
8372497 |
agggaacaaaaactgttgagggtttgattttgaagtggcaaagaacaggcagaatttgctttggcactaatgctttccaggagatggaaaaactgaggct |
8372398 |
T |
|
| Q |
290 |
tttacaacttgatg |
303 |
Q |
| |
|
|||| ||||||||| |
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|
| T |
8372397 |
tttaaaacttgatg |
8372384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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