View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13133_high_37 (Length: 275)

Name: NF13133_high_37
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13133_high_37
NF13133_high_37
[»] chr3 (2 HSPs)
chr3 (143-273)||(35473113-35473243)
chr3 (11-92)||(35473244-35473325)


Alignment Details
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 143 - 273
Target Start/End: Complemental strand, 35473243 - 35473113
Alignment:
143 ccggagagtatatgctttttaatcccagcttgaagatgaaattattagaaggaggataaaccaaagctttggaatacaatccgcaagttgaagatatggg 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
35473243 ccggagagtatatgctttttaatcccagcttgaagatgaaattatgagaacgaggacaaaccaaagctttggaatacaatccgcaagttgaagatatggg 35473144  T
243 aagatgaaatagattttgttgtaacttttct 273  Q
    |||||||||||||||||||||||||||||||    
35473143 aagatgaaatagattttgttgtaacttttct 35473113  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 35473325 - 35473244
Alignment:
11 cataggaaagggaacagctaggaagggaagaggataagactaacaaactnnnnnnntggttagaacataactaaaatccgtc 92  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||       ||||||||||||||||||||||||||    
35473325 cataggaaagggaacagctaggaagggaagaggatcagactaacaaactaaaaaaatggttagaacataactaaaatccgtc 35473244  T

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