View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_high_38 (Length: 271)
Name: NF13133_high_38
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_high_38 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 5 - 271
Target Start/End: Original strand, 7221692 - 7221958
Alignment:
| Q |
5 |
gagtgagaagaacttgaactccagcatatttaaggtcccaactgaattctgctacactagcactaattgcttcttcttgtatgtacttcatgtacattga |
104 |
Q |
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| T |
7221692 |
gagtgagaagaacttgaactccagcatatttaaggtcccaactgaattctgctacactagcactaattgcttcttcttgtatgtacttcatgtacattga |
7221791 |
T |
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| Q |
105 |
tttccttgttgccatgtatagccatgttgcagcccacattagctcatcctatatataagcatcacattaatttaattaattcactcttagtgaattagga |
204 |
Q |
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| T |
7221792 |
tttccttgttgccatgtatagccatgttgcagcccacattaactcatcctatatataagcatcacattaatttaattaattcactcttagtgaattaaga |
7221891 |
T |
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| Q |
205 |
aaggttaattataagagtgattacatacattatagcctgaataggagcagtagaagggacattctcc |
271 |
Q |
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| T |
7221892 |
aaggttaattataagagtgattacatacattatagcctgaataggagcagtagaagggacattctcc |
7221958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 5 - 142
Target Start/End: Original strand, 48526290 - 48526427
Alignment:
| Q |
5 |
gagtgagaagaacttgaactccagcatatttaaggtcccaactgaattctgctacactagcactaattgcttcttcttgtatgtacttcatgtacattga |
104 |
Q |
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| T |
48526290 |
gagtgagaagaacttgaactccagcgtatttaagatcccaactgaattctgctacattagcactaattgattcttcttgtatatatttcatgtacaacga |
48526389 |
T |
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| Q |
105 |
tttccttgttgccatgtatagccatgttgcagcccaca |
142 |
Q |
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| T |
48526390 |
tttctttgttgccatgtatagccaagttgctgcccaca |
48526427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 48526544 - 48526602
Alignment:
| Q |
213 |
ttataagagtgattacatacattatagcctgaataggagcagtagaagggacattctcc |
271 |
Q |
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| T |
48526544 |
ttataagagtaataacatacgttatagcctgaataggagcagtagaaagggcattctcc |
48526602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 4 - 161
Target Start/End: Complemental strand, 50306651 - 50306490
Alignment:
| Q |
4 |
cgagtgagaagaacttgaactccagcatatttaaggtcccaactgaattctgctacactagcactaattgcttcttcttgtatgtacttcatgtacattg |
103 |
Q |
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| T |
50306651 |
cgagtgagaagaacttgaactccgacatatttaaggtcccagctaaataccgttacactagcactaattgcttcttcttgtatatacttcatgtacatag |
50306552 |
T |
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| Q |
104 |
atttccttgttgccat----gtatagccatgttgcagcccacattagctcatcctatatata |
161 |
Q |
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| T |
50306551 |
attttcctgttgccatgtatgtatagccatgttgctgcccacattagctcatcctatatata |
50306490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 259
Target Start/End: Complemental strand, 50306448 - 50306368
Alignment:
| Q |
179 |
attaattcactcttagtgaattaggaaaggttaattataagagtgattacatacattatagcctgaataggagcagtagaa |
259 |
Q |
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| T |
50306448 |
attatttcactcgtagtgaattaagaacggttgattataaaagtgattacatacattatagcctgaacacgaacagtagaa |
50306368 |
T |
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