View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_high_42 (Length: 254)
Name: NF13133_high_42
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_high_42 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 50764462 - 50764218
Alignment:
| Q |
1 |
gaatcttaacctctttaataatactatttgacatgcttaatacaaagcacattactagccaaagagaaatagtatgccatagttatagttttttaatagt |
100 |
Q |
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| T |
50764462 |
gaatcttaacctctttaataatactatttgacatgcttaatacaaagcacattacgagccaaagagaaatagtatgccatagttatagttttttaatagt |
50764363 |
T |
|
| Q |
101 |
tccacatagtgagaaacatcaccttatgtaacatatattacaaaaacagaaaccaagggaccgataaccttggccatactggttgcgggagtaaactgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
50764362 |
tccacatagtgagaaacatcaccttatgtaacatatattacaaaaacagaaaccaagggaccgataaccttggccatactggttgcgggaataaactgaa |
50764263 |
T |
|
| Q |
201 |
gcacaatcataaaaagaaggcttaattgcacttttgacccctatg |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50764262 |
gcacaatcataaaaagaaggcttaattgcacttttgacccctatg |
50764218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 100 - 218
Target Start/End: Original strand, 5805868 - 5805990
Alignment:
| Q |
100 |
ttccacatagtgagaaacatcaccttatgtaacatatattacaaaaacagaaaccaagggaccgataaccttg-----gccatactggttgcgggagtaa |
194 |
Q |
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|||||| || |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| | ||||||| |
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| T |
5805868 |
ttccacttaatgagaaacatcaccttatgtaacatatattaccaaaacggaaaccaagggaccgataaccttggccatgccatactggtag-tggagtaa |
5805966 |
T |
|
| Q |
195 |
actgaagcacaatcataaaaagaa |
218 |
Q |
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|
|||||| |||||||||||||||| |
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| T |
5805967 |
actgaattacaatcataaaaagaa |
5805990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30696165 - 30696121
Alignment:
| Q |
1 |
gaatcttaacctctttaataatactatttgacatgcttaatacaa |
45 |
Q |
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||||||||||||| ||||||||||||||||| | ||||||||||| |
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| T |
30696165 |
gaatcttaacctcattaataatactatttgataagcttaatacaa |
30696121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 52310788 - 52310827
Alignment:
| Q |
206 |
atcataaaaagaaggcttaattgcactttt-gacccctat |
244 |
Q |
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| T |
52310788 |
atcataaaaagaaggcttaattgcacttttggacccctat |
52310827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 50591829 - 50591795
Alignment:
| Q |
208 |
cataaaaagaaggcttaattgcacttttgacccct |
242 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
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| T |
50591829 |
cataaaaataaggcttaattgcacttttgacccct |
50591795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 244
Target Start/End: Original strand, 26932575 - 26932608
Alignment:
| Q |
211 |
aaaaagaaggcttaattgcacttttgacccctat |
244 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
26932575 |
aaaaaaaaggcttaattgcacttttgacccctat |
26932608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 26171531 - 26171494
Alignment:
| Q |
208 |
cataaaaagaaggcttaattgcactttt-gacccctat |
244 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |
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| T |
26171531 |
cataaaaagaaggcttaattgcacttttggacccctat |
26171494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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