View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_high_45 (Length: 249)
Name: NF13133_high_45
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_high_45 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 34785071 - 34785302
Alignment:
| Q |
18 |
ttggtgatgcttacaatgttccttggtaaagaaagaacaaagaaagaatgggatacacttatttacgaagcaggtttcagcagctacaaaattaccccca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||| || || || |||||||| |||||||||||||||||||||| |
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| T |
34785071 |
ttggtgatgcttacaatgttccttggtaaagaaagaacaaagcaagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattaccccca |
34785170 |
T |
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| Q |
118 |
tttctggcttcaagtctctcgttgaagtttatccttaatttcaagttgcaacaatcaagttatgaactatgaattcaataagtttcttttcgaagagtca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34785171 |
tttctggcttcaagtctctcgttgaagtttatccttaatttcaagttgcaaaaatcaagttatgaactatgaattcaataagtttcttttcggagagtca |
34785270 |
T |
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| Q |
218 |
aattaatagtgtttattgtttcctgttggaaa |
249 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
34785271 |
aattaatagtgtttattgtttcctgttggaaa |
34785302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 34776905 - 34777040
Alignment:
| Q |
18 |
ttggtgatgcttacaatgttccttggtaaagaaagaacaaagaaagaatgggatacacttatttacgaagcaggtttcagcagctacaaaattaccccca |
117 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| |||||||||| | ||| || || || |||||||| |||||||||||||||||||||| |
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| T |
34776905 |
ttggtgatgcttacaatgtttcttggtaaagaaagaacaaagcaagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattaccccca |
34777004 |
T |
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| Q |
118 |
tttctggcttcaagtctctcgttgaagtttatcctt |
153 |
Q |
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| T |
34777005 |
tttctggcttcaagtcactcatcgaagtttatcctt |
34777040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 157
Target Start/End: Complemental strand, 11467378 - 11467266
Alignment:
| Q |
45 |
aaagaaagaacaaagaaagaatgggatacacttatttacgaagcaggtttcagcagctacaaaattacccccatttctggcttcaagtctctcgttgaag |
144 |
Q |
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| T |
11467378 |
aaagaaagagaaaagaaagaatggaagaaactcatatatgatgcaggtttcagtagctacaagattactccaatatgtggcttcaagtctcttatagaag |
11467279 |
T |
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| Q |
145 |
tttatccttaatt |
157 |
Q |
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||||||||||||| |
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| T |
11467278 |
tttatccttaatt |
11467266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 157
Target Start/End: Original strand, 11524495 - 11524607
Alignment:
| Q |
45 |
aaagaaagaacaaagaaagaatgggatacacttatttacgaagcaggtttcagcagctacaaaattacccccatttctggcttcaagtctctcgttgaag |
144 |
Q |
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| T |
11524495 |
aaagaaagagaaaagaaagaatggaagaaactcatctatgacgctggcttcagcagctacaagattactccaatatgtggcttcaagtctcttatagaag |
11524594 |
T |
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| Q |
145 |
tttatccttaatt |
157 |
Q |
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||||||||||||| |
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| T |
11524595 |
tttatccttaatt |
11524607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 158
Target Start/End: Complemental strand, 11444474 - 11444373
Alignment:
| Q |
57 |
aagaaagaatgggatacacttatttacgaagcaggtttcagcagctacaaaattacccccatttctggcttcaagtctctcgttgaagtttatccttaat |
156 |
Q |
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|||||||||||||| | |||||| ||| ||||| ||||||||||| || ||||| || || | |||||||||||| || | |||||||||||||||| |
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| T |
11444474 |
aagaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattactcctatatgcggcttcaagtctatcatcgaagtttatccttaat |
11444375 |
T |
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| Q |
157 |
tt |
158 |
Q |
| |
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|| |
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| T |
11444374 |
tt |
11444373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 158
Target Start/End: Original strand, 11487821 - 11487934
Alignment:
| Q |
45 |
aaagaaagaacaaagaaagaatgggatacacttatttacgaagcaggtttcagcagctacaaaattacccccatttctggcttcaagtctctcgttgaag |
144 |
Q |
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||||||||| ||||||||||||| | | ||| || || || || || |||||||||||||| ||||| || || | |||||||||||| ||| | |||| |
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| T |
11487821 |
aaagaaagagaaaagaaagaatggaagaaactcatctatgacgctggcttcagcagctacaagattactccaatatgtggcttcaagtcactcatagaag |
11487920 |
T |
|
| Q |
145 |
tttatccttaattt |
158 |
Q |
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||||||| |||||| |
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| T |
11487921 |
tttatccctaattt |
11487934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 158
Target Start/End: Original strand, 11548634 - 11548735
Alignment:
| Q |
57 |
aagaaagaatgggatacacttatttacgaagcaggtttcagcagctacaaaattacccccatttctggcttcaagtctctcgttgaagtttatccttaat |
156 |
Q |
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|||||||||||||| | |||||| ||| ||||| ||||||||||| || ||||| || || | |||||||||||| || | |||||||||||||||| |
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| T |
11548634 |
aagaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattactcctatatgcggcttcaagtctatcatcgaagtttatccttaat |
11548733 |
T |
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| Q |
157 |
tt |
158 |
Q |
| |
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|| |
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| T |
11548734 |
tt |
11548735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 11508292 - 11508399
Alignment:
| Q |
57 |
aagaaagaatgggatacacttatttacgaagcaggtttcagcagctacaaaattacccccatttctggcttcaagtctctcgttgaagtttatccttaat |
156 |
Q |
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|||||||||||||| | ||| || | ||| ||||||||||||||||| || ||||| || || | || |||||||||||| | ||||| ||||| |||| |
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| T |
11508292 |
aagaaagaatgggagaaactcatattcgacgcaggtttcagcagctataagattacacctatatgcggtttcaagtctctcatcgaagtatatccataat |
11508391 |
T |
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| Q |
157 |
ttcaagtt |
164 |
Q |
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|| ||||| |
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| T |
11508392 |
tttaagtt |
11508399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 158
Target Start/End: Complemental strand, 11441598 - 11441497
Alignment:
| Q |
57 |
aagaaagaatgggatacacttatttacgaagcaggtttcagcagctacaaaattacccccatttctggcttcaagtctctcgttgaagtttatccttaat |
156 |
Q |
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|||||||||||||| | ||| || | ||| ||||| ||||||||||| || ||||| || || | |||||||| ||| || | |||||||||||||||| |
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| T |
11441598 |
aagaaagaatgggagaaactcatattcgacgcaggcttcagcagctataagattacacctatatgcggcttcaaatctatcatcgaagtttatccttaat |
11441499 |
T |
|
| Q |
157 |
tt |
158 |
Q |
| |
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|| |
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|
| T |
11441498 |
tt |
11441497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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