View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_high_46 (Length: 247)
Name: NF13133_high_46
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_high_46 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 31234425 - 31234656
Alignment:
| Q |
16 |
attagtatgtaaatgcagatatattgaagctattagattgttattagattagagtatctacaaaatttattagtataatctaaacaattcaataagatta |
115 |
Q |
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| T |
31234425 |
attagtatgtaaatgcagatatattgaagctattagattgttattagattagagtatctacaaaatttattagtataatctaaacaattcaataagatta |
31234524 |
T |
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| Q |
116 |
tatccaataataaaatatacaatgtattattcttccaccccaattatagttcaccattaaatatcaaatgactagcgaaaagtaattgagcgtttacatt |
215 |
Q |
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| T |
31234525 |
tatccaataataaaatatacaatgtattattcttccaccccaattatagttcaccatcaaatatcaaatgactagcgaaaagtaattgagcgtttacatt |
31234624 |
T |
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| Q |
216 |
tgggagaaatcattggacacgagtttaattct |
247 |
Q |
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| T |
31234625 |
tgggagaaatcattggacacgagtttaattct |
31234656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 31243493 - 31243614
Alignment:
| Q |
15 |
aattagtatgtaaatgcagatatattgaagctattagattgttattagattagagtatctacaaaatttattagtataatctaaacaattcaataagatt |
114 |
Q |
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||||||||| |||||| |||||||| | ||||| ||||| ||||| || |||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
31243493 |
aattagtatctaaatgaagatatatagtagctaatagatatttatttccttggagtatctactaaatttattagtataatctaaacgattcaataagata |
31243592 |
T |
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| Q |
115 |
atatccaataataaaatataca |
136 |
Q |
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| T |
31243593 |
atatcaaataatagaatataca |
31243614 |
T |
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