View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_high_49 (Length: 236)
Name: NF13133_high_49
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_high_49 |
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Alignment Details
Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 26746451 - 26746250
Alignment:
| Q |
16 |
agttttgacattcaatgtggtcttatctaactcgatgaattaatctatacaattacgcgcggacgatatcttgtnnnnnnnnnnncagtacactggtgcc |
115 |
Q |
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| T |
26746451 |
agttttgacattcaatgtggtcttatctaactcgatgaattaatctatacagttacgcgc--acgatatctag--gaaaaaaaaaaagtacac------- |
26746363 |
T |
|
| Q |
116 |
actggtataaggttggcacgtccacatgtgtatataaggacaatcattgtatctcatatttcattcatcgaatcatttcatttcactaatgtctttgata |
215 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||| |
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| T |
26746362 |
--tggtataaagttggcacgtccacatgtgtatacaaggacaatcattgtatctcataattcattcatcgaatcgtttcatctcactaatgtctttgata |
26746265 |
T |
|
| Q |
216 |
atttctacgacattg |
230 |
Q |
| |
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||||||||||||||| |
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| T |
26746264 |
atttctacgacattg |
26746250 |
T |
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