View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_high_6 (Length: 661)
Name: NF13133_high_6
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 331 - 626
Target Start/End: Original strand, 7882981 - 7883279
Alignment:
| Q |
331 |
gcaaatcgaaaattaagaaagaaagatgcaaagggcttgtttctaattcatcagtgcattgatcctaatatttttgagaagaaaattgatcaagaatctg |
430 |
Q |
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| T |
7882981 |
gcaaatcaaaaattaagaaagaaagatgcaaagggcttgtttctaattcatcagtgcattgatcctaatatttttgagaagaaaattgatcaagaatctg |
7883080 |
T |
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| Q |
431 |
caaaaagggcttgggatattatcaagaacgcttatggtggtgatgaaaagataaagaaggtgaagctgcaagctttaaggcgccaatatgaaatgttgta |
530 |
Q |
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| T |
7883081 |
caaaaaggacttgggatattatcaagaacgcttatggtggtgatgaaaagataaagaaggtgaagctgaaagctttaaggcgccaatatgaaatgttgta |
7883180 |
T |
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| Q |
531 |
gatgtcaaatcaagattcaactgcgg---attacttcacaaaagtggtaactctcacatatcaaatgaaatctaatggtgaaacaatgcactgatgttt |
626 |
Q |
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| T |
7883181 |
gatgtcaaatcaagattcaactgctgattattacttcacaaaagtggtaactctcacatatcaaatgaaatataatggtgaaacaatgcaatgaagttt |
7883279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 7034379 - 7034670
Alignment:
| Q |
1 |
acagaattagaaacagcaagaataatcatcacgaagtaattccagataactaaaaactagtacaaatataacagcaaaagaatcatgtaatttgattgca |
100 |
Q |
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| T |
7034379 |
acagaattagaaacagcaagaataaacatcacgaagtaattccagataactaaaaactagtacaaatataacagcaaaagaatcatgtaatttgattgca |
7034478 |
T |
|
| Q |
101 |
agaaatgtctttcgaaagaatatttaggataagtttagatgtgctaaatttgatgccaagtcctagtgtgttgcttattccagacacccttttagaaaat |
200 |
Q |
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| T |
7034479 |
agaaatgtc---------aatatttaggataagcttagatgtgctaaatttgatgccaagtcctagtatgttgcttattccagacacccttttagaaaat |
7034569 |
T |
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| Q |
201 |
tggagatac----gtgcaaaattaaagtcagataccaatgctaattctaacttttgcttaactatccttacatgtaaaacagaacaaagcacaaaatata |
296 |
Q |
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| T |
7034570 |
tggagatacaagagtgcaaaattatagtcaaataccaatgctaattctaacttttgcacaactatccatacatgtaaatcagaacaaagcacaaaatata |
7034669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 2e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 331 - 548
Target Start/End: Original strand, 44756136 - 44756356
Alignment:
| Q |
331 |
gcaaatcgaaaattaagaaagaaagatgcaaagggcttgtttctaattcatcagtgcattgatcctaata-tttttgagaagaaaattgatcaagaatct |
429 |
Q |
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||||||||| |||| ||||||||||||||||| |||||||| ||||||||||||||||||| ||||||| ||||| |||||| | |||||||||||| | |
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| T |
44756136 |
gcaaatcgagaattgagaaagaaagatgcaaaaggcttgttcctaattcatcagtgcattggccctaatatttttttagaagatagttgatcaagaattt |
44756235 |
T |
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| Q |
430 |
gcaaaaagggcttggg--atattatcaagaacgcttatggtggtgatgaaaagataaagaaggtgaagctgcaagctttaaggcgccaatatgaaatgtt |
527 |
Q |
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| T |
44756236 |
gcaaagggtgcttgggatatattctcaagaacgcttatcgtggtgatgagaagatcaagaaggtgaagttgcaagctttaagacgccagcatgaactcct |
44756335 |
T |
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| Q |
528 |
gtagatgtcaaatcaagattc |
548 |
Q |
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| T |
44756336 |
tcagatgtcagatcaagattc |
44756356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 29376360 - 29376473
Alignment:
| Q |
89 |
aatttgattgcaagaaatgtctttcgaaagaatatttaggataagtttagatgtgctaaatttgatgccaagtcctagtgtgttgcttattccagacacc |
188 |
Q |
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||||||||||||| ||||||||| |||||||||||||| | |||||| |||||||| ||||| | |||||||||||||||||||||||| |||||||| |
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| T |
29376360 |
aatttgattgcaaagaatgtcttttgaaagaatatttagaacaagttttgatgtgctgaatttaacaccaagtcctagtgtgttgcttatttcagacacc |
29376459 |
T |
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| Q |
189 |
cttttagaaaattg |
202 |
Q |
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| T |
29376460 |
cttttgaaaaattg |
29376473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 16489500 - 16489443
Alignment:
| Q |
152 |
gatgccaagtcctagtgtgttgcttattccagacacccttttagaaaattggagatac |
209 |
Q |
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|||| |||||||||||||||| |||||||| |||||||||| |||||||||||||| |
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| T |
16489500 |
gatgtcaagtcctagtgtgttacttattcctaacacccttttgaaaaattggagatac |
16489443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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