View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_high_8 (Length: 621)
Name: NF13133_high_8
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 611
Target Start/End: Complemental strand, 31533993 - 31533379
Alignment:
| Q |
1 |
ttaaaattataattaccaacaatttgttnnnnnnntatattggcttaactctnnnnnnnntcaccgtaaaaatcatattaccaaatttaatttttatttt |
100 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31533993 |
ttaaaattataattactaacaatttgttaaaaaaatatattggcttaactctaaaaaaaatcaccgtaaaaatcatattaccaaatttaatttttatttt |
31533894 |
T |
|
| Q |
101 |
atgtctgtataacnnnnnnnnngcacacatgtattaatcacatctcaaaatgtaaatatctgtgaaatcattttaaaagccgacataataataaagagtc |
200 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31533893 |
atgtctgtataactttttttt-gcacacatgtattaatcacatctcaaaatgtaaatatttgtgaaatcattttaaaagccgacataataataaagagtc |
31533795 |
T |
|
| Q |
201 |
atcttcgnnnnnnn-------gttgaaagggtaataaagtgtcatctttgtataatttgattctttttaaacatctttgtataatttgatgagatgtaca |
293 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31533794 |
atcttcttttttttttgttttgttgaaagggtaataaagtgtgatctttgtataatttgattctttttaaacatctttgtataatttgatgagatgtaca |
31533695 |
T |
|
| Q |
294 |
tgttaatttttgttttgtttgaaaaacacatgttaannnnnnnnaatagcaagcaactatcctctaccaaattttggcattaagcatctgtcacagctga |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
31533694 |
tgttaatttttgttttgtttgaaaaacacatgttaattttttttaatagcaagcaactatcctctacgaaattttggcattaagcatctatcacagctga |
31533595 |
T |
|
| Q |
394 |
attatttgcatgattaatgtacaatacttttcatgcttacgattattttaagaactatttggaatttaaataaatcaaacaaacaggtttagacgtagga |
493 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31533594 |
attatttgcatgattaatgtacaatactttt--tgcttacgattattttaagaactatttggaatttaaataaatcaaacaaacaggtttagacgtagga |
31533497 |
T |
|
| Q |
494 |
aattttatggcattcccaattaccataccatatatactaagaagattcttctttgatcggttcttgctgattattacaagagcagtcaatggtcggccat |
593 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31533496 |
aattttatggcattcccaattaccataccatatatactaagaagattcttctttgatcggttcttgctgattattacaagagcagtcaatggtcggccat |
31533397 |
T |
|
| Q |
594 |
gttgatacctttgctact |
611 |
Q |
| |
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||||||||||||| |||| |
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| T |
31533396 |
gttgatacctttgttact |
31533379 |
T |
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