View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_low_15 (Length: 515)
Name: NF13133_low_15
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_low_15 |
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| [»] scaffold0267 (1 HSPs) |
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Alignment Details
Target: scaffold0267 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 14 - 497
Target Start/End: Original strand, 23436 - 23919
Alignment:
| Q |
14 |
atatgaatacagctagtaagctggtgaatgatgttttacaatatgagaagaagaggttacacactgaatgtatggaaaaatgtttgtatcatgggtttgg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23436 |
atatgaatacagctagtaagctggtgaatgatgttttacaatatgagaagaagaggttacacactgaatgtatggaaaaatgtttgtatcatgggtttgg |
23535 |
T |
|
| Q |
114 |
ttcctcatcacccgtggctatgtttggctctggtgctgagataaagcatttggaacttgagaagcttcccttgagtgttgatgtgtttcacccaaacgta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23536 |
ttcctcatcacccgtggctatgtttggctctggtgctgagataaagcatttggaacttgagaagcttcccttgagtgttgatgtgtttcacccaaacgta |
23635 |
T |
|
| Q |
214 |
aatgcaattgacgaaatggagctcctgatgttttttgagaaaaatacttttggttgtatatgtgacatgcaaaagttcacaggcatggtgaaagatgttg |
313 |
Q |
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| T |
23636 |
aatgcaattgacgaaatggagctcctgatgttttttgagaaaaatacttctggttgtatatgtgacatgcaaaagttcacaggcatggtgaaagatgttg |
23735 |
T |
|
| Q |
314 |
aggataaagcaaaatggggcaggataacatttatgacctccaatgctgccaaaagagctgctgagctggatggagaagagttttgtggttcgcccctaaa |
413 |
Q |
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| T |
23736 |
aggataaagcaaaatggggcaagataacatttatgacctccaatgctgccaaaagagctgctgagctggatggagaagagttttgtggttcgcccctaaa |
23835 |
T |
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| Q |
414 |
aatagttcattcacagtcagctatgggaggggatacaacattttcatttcctgcagttgaagcaagaatttcttggcttcgtag |
497 |
Q |
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| T |
23836 |
aatagttcattcacagtcagctatgggaggggatacaacattttcatttcctgcagttgaagcaagaatttcttggcttcgtag |
23919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 14 - 497
Target Start/End: Original strand, 3879524 - 3880007
Alignment:
| Q |
14 |
atatgaatacagctagtaagctggtgaatgatgttttacaatatgagaagaagaggttacacactgaatgtatggaaaaatgtttgtatcatgggtttgg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879524 |
atatgaatacagctagtaagctggtgaatgatgttttacaatatgagaagaagaggttacacactgaatgtatggaaaaatgtttgtatcatgggtttgg |
3879623 |
T |
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| Q |
114 |
ttcctcatcacccgtggctatgtttggctctggtgctgagataaagcatttggaacttgagaagcttcccttgagtgttgatgtgtttcacccaaacgta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879624 |
ttcctcatcacccgtggctatgtttggctctggtgctgagataaagcatttggaacttgagaagcttcccttgagtgttgatgtgtttcacccaaacgta |
3879723 |
T |
|
| Q |
214 |
aatgcaattgacgaaatggagctcctgatgttttttgagaaaaatacttttggttgtatatgtgacatgcaaaagttcacaggcatggtgaaagatgttg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879724 |
aatgcaattgacgaaatggagctcctgatgttttttgagaaaaatacttctggttgtatatgtgacatgcaaaagttcacaggcatggtgaaagatgttg |
3879823 |
T |
|
| Q |
314 |
aggataaagcaaaatggggcaggataacatttatgacctccaatgctgccaaaagagctgctgagctggatggagaagagttttgtggttcgcccctaaa |
413 |
Q |
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| T |
3879824 |
aggataaagcaaaatggggcaagataacatttatgacctccaatgctgccaaaagagctgctgagctggatggagaagagttttgtggttcgcccctaaa |
3879923 |
T |
|
| Q |
414 |
aatagttcattcacagtcagctatgggaggggatacaacattttcatttcctgcagttgaagcaagaatttcttggcttcgtag |
497 |
Q |
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| T |
3879924 |
aatagttcattcacagtcagctatgggaggggatacaacattttcatttcctgcagttgaagcaagaatttcttggcttcgtag |
3880007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 14 - 497
Target Start/End: Complemental strand, 39320146 - 39319662
Alignment:
| Q |
14 |
atatgaatacagctagtaagctggtgaatgatgttttacaatatgagaagaagaggttacacactgaatgtatggaaaaatgtttgtatcatgggtttgg |
113 |
Q |
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|||||||||||||||||| | ||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
39320146 |
atatgaatacagctagtatgatggtgaatgatgttttagaatatgagaaaaagaggttacgcactgaatgtatggaaaaatgtttgtatcatgggtcagg |
39320047 |
T |
|
| Q |
114 |
ttcctcatcacccgtggctatgtttggctctggtgctgagataaagcatttggaacttgagaagcttcccttgagtgttgatgtgtttcaccc-aaacgt |
212 |
Q |
| |
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|||||||||||| | || ||||||| ||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| |||||| |||| | |
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| T |
39320046 |
ttcctcatcacctatagcattgtttgggtctggtgctgagataaagcatttggaacttgagaagcattcattgagtgttgatgtgtgtcacccaaaacat |
39319947 |
T |
|
| Q |
213 |
aaatgcaattgacgaaatggagctcctgatgttttttgagaaaaatacttttggttgtatatgtgacatgcaaaagttcacaggcatggtgaaagatgtt |
312 |
Q |
| |
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||||| |||| | || | |||||||||||||||||| ||||| ||||| | ||||||||||||| || | |||||| | ||||||||||| |||||| |
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| T |
39319946 |
aaatgaaattaatgataaggagctcctgatgtttttggagaagaatacctcaggttgtatatgtgcagtgtacaagttccctggcatggtgaaggatgtt |
39319847 |
T |
|
| Q |
313 |
gaggataaagcaaaatggggcaggataacatttatgacctccaatgctgccaaaagagctgctgagctggatggagaagagttttgtggttcgcccctaa |
412 |
Q |
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||||||| || ||| ||||||| |||||||||| | || | ||||||||||||||||||| |||||||||||||| |||||||| || || || | | |
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| T |
39319846 |
gaggatagagaaaagtggggcaagataacattttcgtcccctgatgctgccaaaagagctgcagagctggatggagaggagttttgcggctcctccttga |
39319747 |
T |
|
| Q |
413 |
aaatagttcattcacagtcagctatgggaggggatacaacattttcatttcctgcagttgaagcaagaatttcttggcttcgtag |
497 |
Q |
| |
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||||| ||| |||||| |||| ||| |||||||||| ||||||||||||||||| ||| |||||| ||||| ||||| |||||| |
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| T |
39319746 |
aaatacttccttcacattcagttattggaggggataaaacattttcatttcctgaagtgaaagcaaaaatttattggcctcgtag |
39319662 |
T |
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