View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13133_low_18 (Length: 464)

Name: NF13133_low_18
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13133_low_18
NF13133_low_18
[»] chr7 (5 HSPs)
chr7 (16-458)||(45852239-45852674)
chr7 (248-341)||(27305505-27305599)
chr7 (310-349)||(31305192-31305231)
chr7 (167-216)||(20335927-20335976)
chr7 (286-346)||(43341023-43341083)
[»] chr6 (3 HSPs)
chr6 (154-349)||(12127254-12127457)
chr6 (248-333)||(33427656-33427742)
chr6 (237-347)||(20836604-20836715)
[»] chr4 (6 HSPs)
chr4 (289-349)||(34214454-34214514)
chr4 (248-349)||(327018-327120)
chr4 (248-349)||(44833917-44834019)
chr4 (310-341)||(3257865-3257896)
chr4 (152-191)||(34216665-34216704)
chr4 (237-296)||(48284335-48284395)
[»] chr1 (2 HSPs)
chr1 (282-351)||(28283162-28283231)
chr1 (152-223)||(28283270-28283341)
[»] chr5 (1 HSPs)
chr5 (282-349)||(3883737-3883804)
[»] chr3 (2 HSPs)
chr3 (156-222)||(34607453-34607519)
chr3 (256-349)||(25653541-25653636)
[»] chr2 (1 HSPs)
chr2 (237-316)||(13783408-13783488)


Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 458
Target Start/End: Original strand, 45852239 - 45852674
Alignment:
Q  16 atattccctactcaattaaccatatatatactaggataggaatggaaggnnnnnnnnnnnnnnnnctgaaccaagctgttgaatcaaaccattactgaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||    
T  45852239 atattccctactcaattaaccatatatatactaggataggaatggaagaaaaaaaaaccaaaaaactgaaccaagctgttgaatcaaaccattactgaaa 45852338  T
Q  116 cggacggaaacaatttgattacagaacagtttagtgcagttttaaaagttataaaattcggttttgtttggtttttcatatgttttcaatgctaccaata 215  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||       |||    
T  45852339 cggacggaaacaatttggttacagaacagtttagtgcagttttaaaagttctaaaattcggttttgtttggttttttatatgttttcaat-------ata 45852431  T
Q  216 acaacaatgcagtttaattcaaaacagttcgattcaattcaaaatgtaaacagttcgatttagttatttgaatttaacaaacaatttagtttaattcgat 315  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  45852432 acaacaatgcaatttaattcaaaacagttcgattcaattcaaaatgtaaatagttcgatttaattatttgaatttagcaaacaatttagtttaattcgat 45852531  T
Q  316 tcaattttcatcccgaaccaaaccatacccaccctattatataacacgcatatgccgtcaatttacgtaataagcatgtaaatgatggtaatatcatctc 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45852532 tcaattttcatcccgaaccaaaccatacccaccctattatataacacgcatatgccgtcaatttacataataagcatgtaaatgatggtaatatcatctc 45852631  T
Q  416 aatttgccaagttaattggatgtagcgatcaaagaataatata 458  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  45852632 aatttgccaagttaattggatgtagcgatcaaagaataatata 45852674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 341
Target Start/End: Complemental strand, 27305599 - 27305505
Alignment:
Q  248 ttcaattcaaaatgtaaacagttcgatttagtta-tttgaatttaacaaacaatttagtttaattcgattcaattttcatcccgaaccaaaccat 341  Q
    ||||||||||||||  ||||||||  |||||||| ||| |||||| ||||||||  ||||| ||||| |||| ||||||||| ||||| ||||||    
T  27305599 ttcaattcaaaatgctaacagttcagtttagttattttaaatttagcaaacaatgcagtttgattcggttcagttttcatcctgaaccgaaccat 27305505  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 31305231 - 31305192
Alignment:
Q  310 ttcgattcaattttcatcccgaaccaaaccatacccaccc 349  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  31305231 ttcggttcatttttcatcccgaaccaaaccatacccaccc 31305192  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 20335976 - 20335927
Alignment:
Q  167 taaaattcggttttgtttggtttttcatatgttttcaatgctaccaataa 216  Q
    ||||||| | ||||||||||| ||| |||| |||||||||||||||||||    
T  20335976 taaaatttgattttgtttggtattttatattttttcaatgctaccaataa 20335927  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 43341083 - 43341023
Alignment:
Q  286 aatttaacaaacaatttagtttaattcgattcaattttcatcccgaaccaaaccataccca 346  Q
    |||||| ||||||||| ||||||||| | |||| ||||||||||||||  |||||| ||||    
T  43341083 aatttatcaaacaattcagtttaatttggttcagttttcatcccgaactgaaccattccca 43341023  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 349
Target Start/End: Complemental strand, 12127457 - 12127254
Alignment:
Q  154 gttttaaaagttataaaattcggttttgtttggtttttcatatgtttt--caatgctaccaataacaacaatgcagtttaattcaaaacagttcgattca 251  Q
    |||||||||||| |||||||   ||||||||| ||||  |||| ||||  ||||| | |||||||  ||||| | ||| | || ||||||||||  |||     
T  12127457 gttttaaaagttctaaaatttaattttgtttgtttttatatatattttttcaatggtgccaataattacaattcggttcagtttaaaacagttcagttcg 12127358  T
Q  252 attcaaaatgtaaacagttcga-----tttagtta-tttgaatttaacaaacaatttagtttaattcgattcaattttcatcccgaaccaaaccataccc 345  Q
    |||||||||||||||| || ||     |||||||| |||||||||  |||||| || |||||| |||| || | ||||||||||||||||||||||||||    
T  12127357 attcaaaatgtaaacaatttgatttggtttagttattttgaatttcgcaaacagttcagtttagttcggttaagttttcatcccgaaccaaaccataccc 12127258  T
Q  346 accc 349  Q
    ||||    
T  12127257 accc 12127254  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 333
Target Start/End: Complemental strand, 33427742 - 33427656
Alignment:
Q  248 ttcaattcaaaatgtaaacagttcgatttagttatttgaa-tttaacaaacaatttagtttaattcgattcaattttcatcccgaac 333  Q
    |||| ||||||||| ||||||||| ||| |||||||| || ||||||||| |||| |||||| |||| |||| ||||||| ||||||    
T  33427742 ttcagttcaaaatgcaaacagttcaattcagttattttaaatttaacaaataattcagtttagttcggttcagttttcattccgaac 33427656  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 347
Target Start/End: Complemental strand, 20836715 - 20836604
Alignment:
Q  237 aaacagttcgattcaattcaaaatgtaaacagttcgatttagttatttga-atttaacaaacaatttagtttaattcgattcaattttcatcccgaacca 335  Q
    |||||||||  |||| ||| ||||| |||||||||  || |||||||| | ||||| |||||| ||||||| | |||| |||| ||||||||||||||      
T  20836715 aaacagttccgttcagttcgaaatgcaaacagttcagttcagttattttagatttagcaaacagtttagttcagttcggttcagttttcatcccgaactg 20836616  T
Q  336 aaccatacccac 347  Q
    ||||||| ||||    
T  20836615 aaccatatccac 20836604  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 349
Target Start/End: Complemental strand, 34214514 - 34214454
Alignment:
Q  289 ttaacaaacaatttagtttaattcgattcaattttcatcccgaaccaaaccatacccaccc 349  Q
    ||||||||||||| |||||| |||| |||| |||||||||||||||||||||| |||||||    
T  34214514 ttaacaaacaattcagtttagttcggttcagttttcatcccgaaccaaaccatgcccaccc 34214454  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 248 - 349
Target Start/End: Complemental strand, 327120 - 327018
Alignment:
Q  248 ttcaattcaaaatgtaaacagttcgatttagttatttgaa-tttaacaaacaatttagtttaattcgattcaattttcatcccgaaccaaaccataccca 346  Q
    ||||||| |||||| |||||||||  || |||||||| || |||| ||||||||| |||||| |||| |||| ||||||||||||||  |||||| ||||    
T  327120 ttcaatttaaaatgcaaacagttcagttcagttattttaaatttagcaaacaattcagtttagttcggttcatttttcatcccgaactcaaccatgccca 327021  T
Q  347 ccc 349  Q
    |||    
T  327020 ccc 327018  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 248 - 349
Target Start/End: Complemental strand, 44834019 - 44833917
Alignment:
Q  248 ttcaattcaaaatgtaaacagttcgatttagttatttgaa-tttaacaaacaatttagtttaattcgattcaattttcatcccgaaccaaaccataccca 346  Q
    |||| ||||||||  |||||||||  || |||||||| || |||| |||||| || | ||| ||||| |||||||||||||||||||| |||||||||||    
T  44834019 ttcagttcaaaatacaaacagttcagttcagttattttaaatttagcaaacagttcaatttgattcggttcaattttcatcccgaaccgaaccataccca 44833920  T
Q  347 ccc 349  Q
    |||    
T  44833919 ccc 44833917  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 341
Target Start/End: Original strand, 3257865 - 3257896
Alignment:
Q  310 ttcgattcaattttcatcccgaaccaaaccat 341  Q
    ||||||||||||||||||||||||||||||||    
T  3257865 ttcgattcaattttcatcccgaaccaaaccat 3257896  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 191
Target Start/End: Complemental strand, 34216704 - 34216665
Alignment:
Q  152 cagttttaaaagttataaaattcggttttgtttggttttt 191  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  34216704 cagttttaaaagttataaaattcgattttgtttgattttt 34216665  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 48284335 - 48284395
Alignment:
Q  237 aaacagttcgattcaattcaaaatgtaaacagttcgatttagtta-tttgaatttaacaaa 296  Q
    |||||||||| ||||| |||||||  ||||||||||||| ||||| ||| |||||||||||    
T  48284335 aaacagttcggttcaaatcaaaatccaaacagttcgattcagttattttaaatttaacaaa 48284395  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 282 - 351
Target Start/End: Complemental strand, 28283231 - 28283162
Alignment:
Q  282 tttgaatttaacaaacaatttagtttaattcgattcaattttcatcccgaaccaaaccatacccacccta 351  Q
    ||||||||||  |||||||  ||||||| |||||||| ||||||||||||| ||||||||| ||||||||    
T  28283231 tttgaatttagtaaacaatccagtttaactcgattcagttttcatcccgaatcaaaccatatccacccta 28283162  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 28283341 - 28283270
Alignment:
Q  152 cagttttaaaagttataaaattcggttttgtttggtttttcatatgttttcaatgctaccaataacaacaat 223  Q
    ||||| |||||||| ||||||||  || |||||||||||| |||| ||||||||| || |||||| ||||||    
T  28283341 cagttataaaagttctaaaattcaattgtgtttggttttttatattttttcaatggtatcaataataacaat 28283270  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 3883804 - 3883737
Alignment:
Q  282 tttgaatttaacaaacaatttagtttaattcgattcaattttcatcccgaaccaaaccatacccaccc 349  Q
    |||||||||| ||||||||| ||||||    | ||||||||||||| |||||||||||||||||||||    
T  3883804 tttgaatttagcaaacaattcagtttagacaggttcaattttcatctcgaaccaaaccatacccaccc 3883737  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 34607519 - 34607453
Alignment:
Q  156 tttaaaagttataaaattcggttttgtttggtttttcatatgttttcaatgctaccaataacaacaa 222  Q
    |||||||||||||||||| | |||||| ||||||||||||  ||||||||| ||||| ||| |||||    
T  34607519 tttaaaagttataaaatttgattttgtatggtttttcataatttttcaatggtaccactaataacaa 34607453  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 349
Target Start/End: Original strand, 25653541 - 25653636
Alignment:
Q  256 aaaatgtaaacagttcgatttagttatttg--aatttaacaaacaatttagtttaattcgattcaattttcatcccgaaccaaaccatacccaccc 349  Q
    |||||| ||||||| ||||| ||||||||   |||||| |||||| |||||||  ||||| |||| ||||||||||||||| | |||| |||||||    
T  25653541 aaaatgcaaacagtacgattcagttatttttaaatttatcaaacagtttagttcgattcggttcagttttcatcccgaaccgagccatgcccaccc 25653636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 316
Target Start/End: Original strand, 13783408 - 13783488
Alignment:
Q  237 aaacagttcgattcaattcaaaatgtaaacagttcgatttagtta-tttgaatttaacaaacaatttagtttaattcgatt 316  Q
    |||||||||  ||||||| |||||| ||||| |||  |||||||| ||| |||||||||||||||| ||||  ||||||||    
T  13783408 aaacagttcagttcaatttaaaatgcaaacaattcagtttagttattttaaatttaacaaacaattcagttcgattcgatt 13783488  T

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