View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_low_19 (Length: 452)
Name: NF13133_low_19
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 34785791 - 34785377
Alignment:
| Q |
1 |
tgttacaaattagaaccttgtaatgattgcatatgttatagatttgaaattaaaaatagatattaatttctttttatcgatgcttgaattactcatatat |
100 |
Q |
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| T |
34785791 |
tgttacaaattagaaccttgtaatgattgcatatgttatagatttgaaattaaaaatagacattaattattttttatcgatgcttgaattactcgtatat |
34785692 |
T |
|
| Q |
101 |
agatacatgatcatttacacttgactcggttggtcgagacattacactatagaagcaggggtcggggttcaaacccgactccccacttactcat----ag |
196 |
Q |
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| T |
34785691 |
agatacataattatttacacttgattcagttggtcgagacattacactatagaagcaggggtcggggttcaaacccgactccccacttattcatatcaag |
34785592 |
T |
|
| Q |
197 |
aagtaaatttcaagacattatactacttgnnnnnnnnnnnnnnnnntatgcatttaacgggtgaatcctaccgttaatgggtgaatcctttttatcaaat |
296 |
Q |
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|| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34785591 |
aaataaatttcaagacattatactgcttaaaaaaaaaaaaaaaacatatgcatttaacgggtgaatcctaccgttaatgggtgaattctttttatcaaat |
34785492 |
T |
|
| Q |
297 |
tagaagaaattattagaaatagacattaagagctttatgtaactaaggggtgaatttcatatattatttaggtagcatatataattcacccatgaattgt |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34785491 |
tagaagaaattattagaaatagacattaagagctttatgtaactaaggggtgaatttcatatattatttaggttgcatatataattcacccatgaattgt |
34785392 |
T |
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| Q |
397 |
tttctttgattagct |
411 |
Q |
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| T |
34785391 |
tttctttgattagct |
34785377 |
T |
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